getContinuousCaseSeries: A function to extract case series continuous feature...

In OhdsiReportGenerator: Observational Health Data Sciences and Informatics Report Generator

A function to extract case series continuous feature characterization results

Description

A function to extract case series continuous feature characterization results

Usage

getContinuousCaseSeries(
  connectionHandler,
  schema,
  cTablePrefix = "c_",
  cgTablePrefix = "cg_",
  databaseTable = "database_meta_data",
  targetId = NULL,
  outcomeId = NULL
)

Arguments

connectionHandler	A connection handler that connects to the database and extracts sql queries. Create a connection handler via 'ResultModelManager::ConnectionHandler$new()'.
schema	The result database schema (e.g., 'main' for sqlite)
cTablePrefix	The prefix used for the characterization results tables
cgTablePrefix	The prefix used for the cohort generator results tables
databaseTable	The name of the table with the database details (default 'database_meta_data')
targetId	An integer corresponding to the target cohort ID
outcomeId	Am integer corresponding to the outcome cohort ID

Details

Specify the connectionHandler, the schema and the target/outcome cohort IDs

Value

A data.frame with the characterization case series results

See Also

Other Characterization: getBinaryCaseSeries(), getBinaryRiskFactors(), getCaseBinaryFeatures(), getCaseContinuousFeatures(), getCaseCounts(), getCharacterizationDemographics(), getContinuousRiskFactors(), getDechallengeRechallenge(), getIncidenceRates(), getTargetBinaryFeatures(), getTargetContinuousFeatures(), getTargetCounts(), getTimeToEvent(), plotAgeDistributions(), plotSexDistributions()

Examples

conDet <- getExampleConnectionDetails()

connectionHandler <- ResultModelManager::ConnectionHandler$new(conDet)

cs <- getContinuousCaseSeries(
  connectionHandler = connectionHandler, 
  schema = 'main',
  targetId = 1, 
  outcomeId = 3
)

OhdsiReportGenerator documentation built on June 8, 2025, 1:09 p.m.