getPredictionDiagnosticTable: Extract specific diagnostic table

In OhdsiReportGenerator: Observational Health Data Sciences and Informatics Report Generator

Extract specific diagnostic table

Description

This function extracts the specified diagnostic table

Usage

getPredictionDiagnosticTable(
  connectionHandler,
  schema,
  plpTablePrefix = "plp_",
  table = "diagnostic_participants",
  diagnosticId = NULL
)

Arguments

connectionHandler	A connection handler that connects to the database and extracts sql queries. Create a connection handler via 'ResultModelManager::ConnectionHandler$new()'.
schema	The result database schema (e.g., 'main' for sqlite)
plpTablePrefix	The prefix used for the patient level prediction results tables
table	The table to extract
diagnosticId	(optional) restrict to the input diagnosticId

Details

Specify the connectionHandler, the resultDatabaseSettings, the table of interest and (optionally) a diagnosticId to filter to

Value

Returns a data.frame with the specified table

See Also

Other Prediction: getPredictionCohorts(), getPredictionDiagnostics(), getPredictionHyperParamSearch(), getPredictionIntercept(), getPredictionModelDesigns(), getPredictionPerformanceTable(), getPredictionPerformances(), getPredictionTopPredictors()

Examples

conDet <- getExampleConnectionDetails()

connectionHandler <- ResultModelManager::ConnectionHandler$new(conDet)

diagPred <- getPredictionDiagnosticTable(
  connectionHandler = connectionHandler, 
  schema = 'main',
  table = 'diagnostic_predictors'
)

OhdsiReportGenerator documentation built on April 12, 2025, 2:09 a.m.