generatePresentationMultiple: generatePresentationMultiple

In OhdsiReportGenerator: Observational Health Data Sciences and Informatics Report Generator

generatePresentationMultiple

Description

Generates a presentation from a Strategus result

Usage

generatePresentationMultiple(
  server,
  username,
  password,
  dbms,
  resultsSchema = NULL,
  targetId = 1,
  targetName = "target cohort",
  cmSubsetId = 2,
  sccsSubsetId = NULL,
  indicationName = NULL,
  outcomeIds = 3,
  outcomeNames = "outcome cohort",
  comparatorIds = c(2, 4),
  comparatorNames = c("comparator cohort 1", "comparator cohort 2"),
  covariateIds = NULL,
  details = list(studyPeriod = "All Time", restrictions = "Age - None"),
  title = "ASSURE 001 ...",
  lead = "add name",
  date = Sys.Date(),
  backgroundText = "",
  evaluationText = "",
  outputLocation,
  outputName = paste0("presentation_", gsub(":", "_", gsub(" ", "_",
    as.character(date()))), ".html"),
  intermediateDir = tempdir()
)

Arguments

server	The server containing the result database
username	The username for an account that can access the result database
password	The password for an account that can access the result database
dbms	The dbms used to access the result database
resultsSchema	The result database schema
targetId	The cohort definition id for the target cohort
targetName	A friendly name for the target cohort
cmSubsetId	Optional a subset ID for the cohort method/prediction results
sccsSubsetId	Optional a subset ID for the SCCS and characterization results
indicationName	A name for the indication if used or NULL
outcomeIds	The cohort definition id for the outcome
outcomeNames	Friendly names for the outcomes
comparatorIds	The cohort method comparator cohort id
comparatorNames	Friendly names for the comparators
covariateIds	A vector of covariateIds to include in the characterization
details	a list with the studyPeriod and restrictions
title	A title for the presentation
lead	The name of the presentor
date	The date of the presentation
backgroundText	a character with any background text
evaluationText	a list of bullet points for the evaluation
outputLocation	The file location and name to save the protocol
outputName	The name of the html protocol that is created
intermediateDir	The work directory for quarto

Details

Specify the connection details to the result database and the schema name to generate a presentation.

Value

An named R list with the elements 'standard' and 'source'

OhdsiReportGenerator documentation built on April 12, 2025, 2:09 a.m.