get_ott_lineage: Get the Open Tree of Life Taxonomic identifier (OTT id) and...

In OpenTreeChronograms: Open Tree of Life Chronograms

Get the Open Tree of Life Taxonomic identifier (OTT id) and name of all lineages from one or more input taxa.

Description

Get the Open Tree of Life Taxonomic identifier (OTT id) and name of all lineages from one or more input taxa.

Usage

get_ott_lineage(input = NULL, ott_ids = NULL)

Arguments

input	Optional. A character vector of names.
ott_ids	If not NULL, it takes this argument and ignores input. A numeric vector of ott ids obtained with rotl::taxonomy_taxon_info() or rotl::tnrs_match_names() or tnrs_match().

Value

A list of named numeric vectors of ott ids from input and all the clades it belongs to.

Examples

taxa <- c("Homo", "Bacillus anthracis", "Apis", "Salvia")
# lin <- get_ott_lineage(taxa)

# Look up an unknown OTT id:
get_ott_lineage(ott_id = 454749)

 # end donttest

OpenTreeChronograms documentation built on June 22, 2022, 9:08 a.m.