Man pages for PAMpal
Load and Process Passive Acoustic Data
| AcousticEvent-class | 'AcousticEvent' Class |
| AcousticStudy-class | 'AcousticStudy' Class |
| addAnnotation | Add Annotation Data to an AcousticStudy Object |
| addBinaries | Add Binaries to a PAMpalSettings Object |
| addCalibration | Add a Calibration File to a PAMpalSettings Object |
| addDatabase | Add a Database to a PAMpalSettings Object |
| addFPOD | Add FPOD Detector to an AcousticStudy |
| addFunction | Add a Function to a PAMpalSettings Object |
| addGps | Add GPS Locations to an AcousticStudy |
| addHydrophoneDepth | Add Hydrophone Depth Data to an AcousticStudy |
| addMeasures | Add Measures |
| addNote | addNote |
| addRecordings | Add Recordings to an AcousticStudy Object |
| addSettings | Add Settingss to a PAMpalSettings Object |
| addWaveHeight | Add Wave Height Data to an AcousticStudy |
| bindStudies | Combine AcousticStudy Objects |
| calculateAverageSpectra | Calculate Average Spectra of Clicks |
| calculateEchoDepth | Calculate Depth from Echoes |
| calculateICI | Calculate Inter-Click Interval |
| calculateModuleData | Run Custom Calculations on Pamguard Module Data |
| checkStudy | Check an AcousticStudy Object for Issues |
| export_banter | Export Data for a BANTER Model |
| exStudy | Example AcousticStudy Object |
| filter | Filter an AcousticStudy or AcousticEvent Object |
| filterEchoDepths | Filter Candidate Echo Depths |
| getBinaryData | Get Raw Binary Data for Detections |
| getClipData | Get Wav Clips of Data |
| getDetectorData | Extract and Combine Detector Data |
| getWarnings | Get Warning Messages |
| is.AcousticEvent | Check if an Object is an AcousticEvent |
| is.AcousticStudy | Check if an Object is an AcousticStudy |
| is.PAMpalSettings | Check if an Object is a PAMpalSettings |
| loadPamguardXML | Load Pamguard XML Settings |
| markAnnotated | Mark Detections as Annotated |
| matchEnvData | Match Environmental Data to an AcousticStudy Object |
| matchTimeData | Match time-based data to PAMpal objects |
| PAMpal.accessors | 'AcousticEvent' and 'AcousticStudy' accessors |
| PAMpalSettings | Constructor for PAMpalSettings Object |
| PAMpalSettings-class | 'PAMpalSettings' Class |
| plotDataExplorer | Explore Data in an Interactive Shiny Plot |
| plotGram | Plot Spectrogram or Cepstrogram |
| plotWaveform | Plot Graphical Representations of Waveforms |
| processPgDetections | Load and Process Detections from Pamguard |
| removeBinaries | Remove Binaries from a PAMpalSettings Object |
| removeCalibration | Remove a Calibration Function from a PAMpalSettings Object |
| removeDatabase | Remove a Database from a PAMpalSettings Object |
| removeFunction | Remove a Function from a PAMpalSettings Object |
| removeNote | removeNote |
| removeSettings | Remove Settings from a PAMpalSettings Object |
| roccaWhistleCalcs | Calculate a Set of Measurements for Whistles |
| runDepthReview | Run Echo Depth Review App |
| runIciReview | Run ICI Review App |
| sampleDetector | Subsample Detectors in AcousticStudy |
| setSpecies | Set the Species Classification of Events |
| standardCepstrumCalcs | Calculate a Set of Measurements from a Cepstrum Contour |
| standardClickCalcs | Calculate a Set of Measurements for Clicks |
| summariseDiveDepth | Summarise Dive Depth |
| testCeps | A fake cepstrum contour |
| testClick | A two-channel recording of a delphinid click |
| testGPL | A fake GPL detection |
| testWhistle | A fake whistle contour |
| updateFiles | Update Location of Files in an AcousticStudy |
| updatePamObject | Update PAMpal S4 Object |
| writeEventClips | Create Wav Clips of Data |
| writeWignerData | Write Wigner Transform Data of Click Detections to Disk |
