PATHChange: A Tool for Identification of Differentially Expressed Pathways using Multi-Statistic Comparison

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An R tool suited to Affymetrix microarray data that combines three different statistical tests (Bootstrap, Fisher exact and Wilcoxon signed rank) to evaluate genetic pathway alterations.

Author
Fontoura, C.A.R.S. and Mombach, J.C.M.
Date of publication
2016-06-17 08:18:35
Maintainer
Carla Fontoura <carladriani@yahoo.com.br>
License
GPL-2
Version
1.0

View on CRAN

Man pages

PATHChange
Determination of differentially expressed pathways using...
PATHChangeDat
PATHChangeDat
PATHChangeList
PATHChangeList
PATHChange-package
\Sexpr[results=rd,stage=build]{tools:::Rd_package_title("PATHChange")}
PATHChangeVenn
PATHChangeVenn

Files in this package

PATHChange
PATHChange/inst
PATHChange/inst/extdata
PATHChange/inst/extdata/path.rds
PATHChange/inst/extdata/genes.txt
PATHChange/inst/extdata/eDat.csv
PATHChange/inst/extdata/MeanData.rds
PATHChange/inst/extdata/BigPathways.txt
PATHChange/NAMESPACE
PATHChange/R
PATHChange/R/PATHChangeVenn.R
PATHChange/R/PATHChangeList.R
PATHChange/R/PATHChangeDat.R
PATHChange/R/PATHChange.R
PATHChange/MD5
PATHChange/build
PATHChange/build/partial.rdb
PATHChange/DESCRIPTION
PATHChange/man
PATHChange/man/PATHChangeDat.Rd
PATHChange/man/PATHChange-package.Rd
PATHChange/man/PATHChange.Rd
PATHChange/man/PATHChangeList.Rd
PATHChange/man/PATHChangeVenn.Rd