PATHChange: A Tool for Identification of Differentially Expressed Pathways using Multi-Statistic Comparison

An R tool suited to Affymetrix microarray data that combines three different statistical tests (Bootstrap, Fisher exact and Wilcoxon signed rank) to evaluate genetic pathway alterations.

Install the latest version of this package by entering the following in R:
install.packages("PATHChange")
AuthorFontoura, C.A.R.S. and Mombach, J.C.M.
Date of publication2016-06-17 08:18:35
MaintainerCarla Fontoura <carladriani@yahoo.com.br>
LicenseGPL-2
Version1.0

View on CRAN

Files

inst
inst/extdata
inst/extdata/path.rds
inst/extdata/genes.txt
inst/extdata/eDat.csv
inst/extdata/MeanData.rds
inst/extdata/BigPathways.txt
NAMESPACE
R
R/PATHChangeVenn.R R/PATHChangeList.R R/PATHChangeDat.R R/PATHChange.R
MD5
build
build/partial.rdb
DESCRIPTION
man
man/PATHChangeDat.Rd man/PATHChange-package.Rd man/PATHChange.Rd man/PATHChangeList.Rd man/PATHChangeVenn.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.