PATHChangeVenn: PATHChangeVenn

In PATHChange: A Tool for Identification of Differentially Expressed Pathways using Multi-Statistic Comparison

Description

The results of PATHChange are presented through Venn diagrams that provide the consensus of differentially expressed pathways using the statistical tests for the chosen significance level.

Usage

PATHChangeVenn(p.value, p, writePDF, destDIR)

Arguments

p.value	The result of the PATChange function.
p	Significance level
writePDF	TRUE for write a .pdf file result
destDIR	Destination folder for .pdf file.

Value

VennDiagram

A venn diagram with the consensus of the statistical tests.

Author(s)

Carla A. R. S. Fontoura

See Also

PATHChange

Examples

pval <- list(data.frame(Pathway=paste("Path", 1:10, sep="_"), 
                        Activity=c(0.50478,0.5019,0.49059,0.49056,0.48591,0.49457,
                                   0.49228,0.49628,0.48908,0.48698),
                        Bootstrap=c(0.06911578,0.11415555,0.98059024,0.30543333, 
                                    0.02051875,0.00098,0.12326666,0.578624,0.01206153,
                                    0.86294),
                        Fisher=c(0.32619656,0.00310826,0.26249225,0.26389102,0.00060358,
                                 0.00015427,0.01796717,0.00069173,8.22E-06,0.00310826),
                        Wilcoxon=c(0.11862404,0.00502450,0.00543268,1.32E-10,0.22675787,
                                   8.45E-06,0.46767425,4.51E-17,9.11E-08,0.00467674)))
PATHChangeVenn(p.value=pval, p=0.05, writePDF=FALSE)

PATHChange documentation built on May 1, 2019, 10:20 p.m.