PATHChangeList: PATHChangeList
In PATHChange: A Tool for Identification of Differentially Expressed Pathways using Multi-Statistic Comparison
Description
Usage
Arguments
Value
Author(s)
Examples
Description
This function reads the file 'filePathway.txt' to organize the pathways separately in lists.
Usage
1
PATHChangeList(filePathway, writeRDS, destDIR)
Arguments
filePathway
The 'filePathway.txt' file.
writeRDS
TRUE for write a .rds file result
destDIR
Destination folder for .rds file.
Value
path
An object of class "list" is returned and saved in "rds" format.
Author(s)
Carla A. R. S. Fontoura
Examples
1
2
3
4
5
6
7
8
# For Ontocancro pathways, you can download a file with all pathways from
# http://ontocancro.inf.ufsm.br/download/BigPathways.zip
filePathway<-system.file("extdata", "BigPathways.txt", package = "PATHChange")
PATHChangeList(filePathway = filePathway, writeRDS = FALSE)
require(rlist)
path <- list.load(file.path(tempdir(),"path.rds"))
PATHChange documentation built on May 1, 2019, 10:20 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) Examples
Description
This function reads the file 'filePathway.txt' to organize the pathways separately in lists.
Usage
1 | PATHChangeList(filePathway, writeRDS, destDIR)
|
Arguments
filePathway |
The 'filePathway.txt' file. |
writeRDS |
TRUE for write a .rds file result |
destDIR |
Destination folder for .rds file. |
Value
path |
An object of class "list" is returned and saved in "rds" format. |
Author(s)
Carla A. R. S. Fontoura
Examples
1 2 3 4 5 6 7 8 | # For Ontocancro pathways, you can download a file with all pathways from
# http://ontocancro.inf.ufsm.br/download/BigPathways.zip
filePathway<-system.file("extdata", "BigPathways.txt", package = "PATHChange")
PATHChangeList(filePathway = filePathway, writeRDS = FALSE)
require(rlist)
path <- list.load(file.path(tempdir(),"path.rds"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.