PCMTreeDtNodes: A data.table with time, part and regime information for the...
In PCMBase: Simulation and Likelihood Calculation of Phylogenetic Comparative Models
PCMTreeDtNodes R Documentation
A data.table with time, part and regime information for the nodes in a tree
Description
A data.table with time, part and regime information for the nodes in a tree
Usage
PCMTreeDtNodes(tree)
Arguments
tree
a phylo object with node-labels and parts
Value
a data.table with a row for each node in tree and columns as follows:
- startNode
the starting node of each edge or NA_integer_ for the root
- endNode
the end node of each edge or the root id for the root
- startNodeLab
the character label for the startNode
- endNodeLab
the character label for endNode
- startTime
the time (distance from the root node) for the startNode or
NA_real_ for the root node
- endTime
the time (distance from the root node) for the endNode or
NA_real_ for the root node
- part
the part to which the edge belongs, i.e. the part of the
endNode
- regime
the regime to which the edge belongs, i.e. the regime of the
part of the endNode
Examples
PCMTreeDtNodes(PCMBaseTestObjects$tree.ab)
PCMBase documentation built on May 29, 2024, 8:39 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| PCMTreeDtNodes | R Documentation |
A data.table with time, part and regime information for the nodes in a tree
Description
A data.table with time, part and regime information for the nodes in a tree
Usage
PCMTreeDtNodes(tree)
Arguments
tree |
a phylo object with node-labels and parts |
Value
a data.table with a row for each node in tree and columns as follows:
- startNode
the starting node of each edge or NA_integer_ for the root
- endNode
the end node of each edge or the root id for the root
- startNodeLab
the character label for the startNode
- endNodeLab
the character label for endNode
- startTime
the time (distance from the root node) for the startNode or NA_real_ for the root node
- endTime
the time (distance from the root node) for the endNode or NA_real_ for the root node
- part
the part to which the edge belongs, i.e. the part of the endNode
- regime
the regime to which the edge belongs, i.e. the regime of the part of the endNode
Examples
PCMTreeDtNodes(PCMBaseTestObjects$tree.ab)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.