Man pages for PIGE
Self Contained Gene Set Analysis for Gene- And Pathway-Environment Interaction Analysis
| ARTP.GE | Gene and pathway p-values using ARTP method |
| bootstrap.snp | Parallel computing of the Likelihhod ratio test (or Wald... |
| bootstrap.wrapper.cat.inter.Y.and.X | Internal function used for the parallel computation on the... |
| bootstrap.wrapper.cont.inter.Y.and.X | Internal function used for the parallel computation on the... |
| bootstrap.wrapper.cont.Y.and.X | Internal function used for the parallel computation on the... |
| compute.p.snp.obs | Likelihhod ratio test (or Wald test) for an interaction term... |
| data.pathway | Fictive data frame corresponding to the gene x pathway... |
| data.pathway.surv | Fictive data frame corresponding to the gene x pathway... |
| data.pige | Sample data of a case-control study |
| data.surv | Fictive data set for sample data of a survival analysis. |
| data.to.list.gene.snp | Annotation gene/SNP |
| data.to.PIGE | Generate data for Gene- and Pathway-environment interaction |
| list.gene.snp | Fictive list for the case-control study example containing... |
| list.gene.snp.surv | Fictive list (for survival example) containing the names of... |
| LR.cont | Wald test for an adjusted model. |
| LR.cont.boot | Wald test for an adjusted model. |
| LR.cont.surv | Wald test for an adjusted model. |
| LR.inter.cat | Likelihhod ratio test for an interaction term |
| LR.inter.cat.boot | Likelihhod ratio test for an interaction term |
| LR.inter.cat.surv | Likelihhod ratio test for an interaction term |
| LR.inter.cont | Wald test for an interaction term |
| LR.inter.cont.boot | Wald test for an interaction term |
| LR.inter.cont.surv | Wald test for an interaction term |
| permutation.snp | Parallel computing of the Likelihhod ratio test (or Wald... |
| permutation.wrapper.cat.inter | Internal function used for the parallel computation on the... |
| permutation.wrapper.cat.inter.Y.and.X | Internal function used for the parallel computation on the... |
| permutation.wrapper.cat.inter.Y.within.X | Internal function used for the parallel computation on the... |
| permutation.wrapper.cont | Internal function used for the parallel computation on the... |
| permutation.wrapper.cont.inter | Internal function used for the parallel computation on the... |
| permutation.wrapper.cont.inter.Y.and.X | Internal function used for the parallel computation on the... |
| permutation.wrapper.cont.inter.Y.within.X | Internal function used for the parallel computation on the... |
| permutation.wrapper.cont.Y.and.X | Internal function used for the parallel computation on the... |
| PIGE-package | Gene and pathway p-values using the Adaptive Rank Truncated... |
| snp.gene.select | Fictive data frame containing the names of the gene (first... |
