Man pages for PIGE
Self Contained Gene Set Analysis for Gene- And Pathway-Environment Interaction Analysis

ARTP.GEGene and pathway p-values using ARTP method
bootstrap.snpParallel computing of the Likelihhod ratio test (or Wald...
bootstrap.wrapper.cat.inter.Y.and.XInternal function used for the parallel computation on the...
bootstrap.wrapper.cont.inter.Y.and.XInternal function used for the parallel computation on the...
bootstrap.wrapper.cont.Y.and.XInternal function used for the parallel computation on the...
compute.p.snp.obsLikelihhod ratio test (or Wald test) for an interaction term...
data.pathwayFictive data frame corresponding to the gene x pathway...
data.pathway.survFictive data frame corresponding to the gene x pathway...
data.pigeSample data of a case-control study
data.survFictive data set for sample data of a survival analysis.
data.to.list.gene.snpAnnotation gene/SNP
data.to.PIGEGenerate data for Gene- and Pathway-environment interaction
list.gene.snpFictive list for the case-control study example containing...
list.gene.snp.survFictive list (for survival example) containing the names of...
LR.contWald test for an adjusted model.
LR.cont.bootWald test for an adjusted model.
LR.cont.survWald test for an adjusted model.
LR.inter.catLikelihhod ratio test for an interaction term
LR.inter.cat.bootLikelihhod ratio test for an interaction term
LR.inter.cat.survLikelihhod ratio test for an interaction term
LR.inter.contWald test for an interaction term
LR.inter.cont.bootWald test for an interaction term
LR.inter.cont.survWald test for an interaction term
permutation.snpParallel computing of the Likelihhod ratio test (or Wald...
permutation.wrapper.cat.interInternal function used for the parallel computation on the...
permutation.wrapper.cat.inter.Y.and.XInternal function used for the parallel computation on the...
permutation.wrapper.cat.inter.Y.within.XInternal function used for the parallel computation on the...
permutation.wrapper.contInternal function used for the parallel computation on the...
permutation.wrapper.cont.interInternal function used for the parallel computation on the...
permutation.wrapper.cont.inter.Y.and.XInternal function used for the parallel computation on the...
permutation.wrapper.cont.inter.Y.within.XInternal function used for the parallel computation on the...
permutation.wrapper.cont.Y.and.XInternal function used for the parallel computation on the...
PIGE-packageGene and pathway p-values using the Adaptive Rank Truncated...
snp.gene.selectFictive data frame containing the names of the gene (first...
PIGE documentation built on Aug. 30, 2017, 9:02 a.m.