compute.sqrt.dist | Compute the vector of branch scaling parameters |
dmvnorminvgamma | Compute the pdf for multi-variate normal-inverse-gamma random... |
dnorminvgamma | Compute the pdf for normal-inverse-gamma random variates |
GO.groups | GO terms and genes |
good.groups | Find groups represented in the data |
mean_invgamma | The mean of the inverse gamma distribution |
normalize.vcv | Compute the variance-covariance matrix of normalized... |
norminvgamma.shift.like.norm | Calculate the likelihood of normalized comparative data as... |
norminvgamma.shift.sim.group | Simulate phylogenetic comparative data as Brownian motions... |
OU.invgamma.like.norm | Calculate the likelihood of normalized comparative data as... |
OU.invgamma.sim.group | Simulate phylogenetic comparative data as OUs with inverse... |
OU.vcv | The variance covariance matrix for an Ornstein-Uhlenbeck... |
plot_logfoldchange | Plot densities of expression differences, possibly normalized |
plot_wAICbarplot | Plot a barplot of AIC weights for each model and each gene... |
read.exp | Read gene expression data from a file, sorted by a... |
read.groups | Read in the members of a gene group |
remove.from.genome | Remove genes from a specified group from the data |
rnorminvgamma | Draw normal-inverse-gamma distributed random variates |
test.groups | Test all possible single-rate shift Brownian motion models... |
test.subtrees | Test all possible single-rate shift Brownian motion models... |
var_invgamma | The variance of the inverse gamma distribution |
yeast.homozygote | Yeast homozygote transcription profiles |
yeast.hybrid | Yeast hybrid transcription profiles |
yeast.tree | Phylogenetic tree of yeast species |
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