Description Usage Arguments Value
View source: R/brownian_motion_package.r
This function returns the variance-covariance matrix corresponding to an Ornstein-Uhlenbeck process run along a phylogeny
1 | OU.vcv(phy, theta)
|
phy |
an ape format phylogeny |
theta |
the constraint parameter of the Ornstein-Uhlenbeck process |
a matrix with nrow = ncol = length(phy$tip.label), where the i,jth entry corresponds to the covariance between species i and j. NB: this is computed assuming that the rate of evolution is equal to one, and can be rescaled simply by multiplying
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