Description Usage Arguments Value Examples
View source: R/brownian_motion_package.r
This function takes in the list of genes for which gene expression data are available as well as the list of gene groups produced by read.groups and a minimum size (min_size) and returns those genes that have at least min_size genes with data available
1 | good.groups(genes, groups, min_size = 2)
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genes |
a vector containing the names of each gene for which expression data is available |
groups |
a list of gene groups, in the same format as the output of read.groups |
min_size |
the minimum size of groups to be considered |
A vector of group names that had at least min_size genes represented in the data
1 2 3 4 | data(yeast)
length(GO.groups)
GO.groups.pruned = good.groups(colnames(yeast.hybrid),GO.groups,10)
length(GO.groups.pruned)
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