Nothing
###############################
#### Test prospective ####
###############################
library(PRDA)
#---- input checks ----
context("prospective inputs specification")
test_that("inputs are correctly specified", {
# Redefine function to avoid specify arguments each the times
test_prospective <- function(effect_size = .3, power = .8, ratio_n = 1,
test_method = "pearson", alternative = "two_sided",
sig_level = .05, ratio_sd = 1, B = 10, tl = -Inf,
tu = Inf, B_effect = 10, sample_range = c(2, 1000),
eval_power = "mean", tol = .01,
display_message = FALSE, seed = 2020){
with_seed(seed = seed,
code = prospective(effect_size, power, ratio_n, test_method,
alternative, sig_level, ratio_sd, B, tl, tu, B_effect,
sample_range, eval_power, tol, display_message))
}
#---- Arguments ----
# effect_size
effect_size_text <- "Argument 'effect_size' has to be a single numeric value or a function"
expect_error(test_prospective(effect_size = Inf), effect_size_text)
expect_error(test_prospective(effect_size = "ciao"), effect_size_text)
expect_error(test_prospective(effect_size = c(1,2)), effect_size_text)
# power
power_text <- "Argument 'power' has to be a single value between 0 and 1"
expect_error(test_prospective(power = Inf), power_text)
expect_error(test_prospective(power = "ciao"), power_text)
expect_error(test_prospective(power = c(.5,.6)), power_text)
expect_error(test_prospective(power = 1), power_text)
expect_error(test_prospective(power = -1), power_text)
# ratio_n
ratio_n_text <- "If specified, argument 'ratio_n' has to be a single positive value"
expect_error(test_prospective(ratio_n = Inf), ratio_n_text)
expect_error(test_prospective(ratio_n = "ciao"), ratio_n_text)
expect_error(test_prospective(ratio_n = c(.5,.6)), ratio_n_text)
expect_error(test_prospective(ratio_n = -.5), ratio_n_text)
# sig_level
sig_level_text <- "Argument 'sig_level' has to be a single value between 0 and 1"
expect_error(test_prospective(sig_level = 1), sig_level_text)
expect_error(test_prospective(sig_level = Inf), sig_level_text)
expect_error(test_prospective(sig_level = 0), sig_level_text)
expect_error(test_prospective(sig_level = "ciao"), sig_level_text)
expect_error(test_prospective(sig_level = c(.1,.2)), sig_level_text)
# ratio_sd
ratio_sd_text <- "Argument 'ratio_sd' has to be a single finite number grater than 0"
expect_error(test_prospective(ratio_sd = -1), ratio_sd_text)
expect_error(test_prospective(ratio_sd = Inf), ratio_sd_text)
expect_error(test_prospective(ratio_sd = 0), ratio_sd_text)
expect_error(test_prospective(ratio_sd = "ciao"), ratio_sd_text)
expect_error(test_prospective(ratio_sd = c(.1,.2)), ratio_sd_text)
# B
B_text <- "Argument 'B' has to be a single integer value grater than 1"
expect_error(test_prospective(B = 1), B_text)
expect_error(test_prospective(B = Inf), B_text)
expect_error(test_prospective(B = "ciao"), B_text)
expect_error(test_prospective(B = c(10,20)), B_text)
# tl
tl_text <- "Argument 'tl' has to be a single numeric value"
expect_error(test_prospective(tl = "ciao"), tl_text)
expect_error(test_prospective(tl = c(10,20)), tl_text)
# tu
tu_text <- "Argument 'tu' has to be a single numeric value"
expect_error(test_prospective(tu = "ciao"), tu_text)
expect_error(test_prospective(tu = c(10,20)), tu_text)
# B_effect
B_effect_text <- "Argument 'B_effect' has to be a single integer value grater than 1"
expect_error(test_prospective(B_effect = 1), B_effect_text)
expect_error(test_prospective(B_effect = Inf), B_effect_text)
expect_error(test_prospective(B_effect = "ciao"), B_effect_text)
expect_error(test_prospective(B_effect = c(10,20)), B_effect_text)
# sample_range
sample_range_text1 <- "Argument 'sample_range' has to be a length-2 numeric vector"
sample_range_text2 <- "Argument 'sample_range' minimum has to be grater than 1 and less than sample range maximum"
expect_error(test_prospective(sample_range = 1), sample_range_text1)
expect_error(test_prospective(sample_range = c(10,20,20)), sample_range_text1)
expect_error(test_prospective(sample_range = c(10,"20")), sample_range_text1)
expect_error(test_prospective(sample_range = c(10,Inf)), sample_range_text1)
expect_error(test_prospective(sample_range = c(10,8)), sample_range_text2)
expect_error(test_prospective(sample_range = c(1,8)), sample_range_text2)
# tol
tol_text <- "Argument 'tol' has to be a single value between 0 and 1"
expect_error(test_prospective(tol = 1), tol_text)
expect_error(test_prospective(tol = Inf), tol_text)
expect_error(test_prospective(tol = 0), tol_text)
expect_error(test_prospective(tol = "ciao"), tol_text)
expect_error(test_prospective(tol = c(.1,.2)), tol_text)
# display_message
display_text <- "Argument 'display_message' has to be logical"
expect_error(test_prospective(display_message = 1), display_text)
expect_error(test_prospective(display_message = Inf), display_text)
expect_error(test_prospective(display_message = NULL), display_text)
expect_error(test_prospective(display_message = "ciao"), display_text)
expect_error(test_prospective(display_message = c(.1,.2)), display_text)
#---- Other cases ----
# coherence effect_type and test_method
# coherence_corr <- "If 'effect_type = correlation', argument 'test_method' has to be 'pearson'"
# expect_error(test_prospective(effect_type = "correlation", test_method = "paired"),
# coherence_corr)
# coherence_cohen <- "No appropriate 'test_method' for 'effect_type = cohen_d'"
# expect_error(test_prospective(effect_type = "cohen_d", test_method = "pearson"),
# coherence_cohen)
# correlation and ratio_n
correlation_text <- "If 'test_method = pearson', argument 'ratio_n' is set to NULL"
expect_warning(test_prospective(test_method = "pearson", ratio_n = 2),
correlation_text)
# one_sample and ratio_n
one_sample_text <- "If 'test_method = one_sample', argument 'ratio_n' must be set to NULL"
expect_error(test_prospective(ratio_n = 3, test_method = "one_sample"),
one_sample_text)
# paired and ratio_n
paired_text <- "If 'test_method = paired', argument 'ratio_n' has to be 1"
expect_error(test_prospective(test_method = "paired", ratio_n = 2),
paired_text)
expect_error(test_prospective(test_method = "paired", ratio_n = NULL),
paired_text)
# two_sample or welch and ratio_n
t_test_text <- "Argument 'ratio_n' is required for the specified 'test_method'"
expect_error(test_prospective(ratio_n = NULL, test_method = "two_sample"),
t_test_text)
expect_error(test_prospective(ratio_n = NULL, test_method = "welch"),
t_test_text)
# sample_range
sample_range <- "Actual power = 0.16 with n = 100\n try to increase maximum of sample_range > 100."
expect_error(test_prospective(effect_size = .1, test_method = "two_sample",
sample_range = c(5,100), B=100), sample_range)
# tol issue
tol_text <- "Required power according to tolerance value can not be obtained.\nIncrease tolerance value."
expect_message(test_prospective(effect_size = .35, B=100, sample_range = c(40,120),
tol=.001), tol_text)
# welch and ratio_sd
t_test_ratio_text1 <- "Argument 'ratio_sd' is required only for 'test_method = welch'"
t_test_ratio_text2 <- "Argument 'ratio_sd' can not be 1 for 'test_method = welch'\n Consider 'test_method = two_sample' instead"
expect_error(test_prospective(ratio_sd = 1.5, test_method = "two_sample"),
t_test_ratio_text1)
expect_error(test_prospective(ratio_sd = 1, test_method = "welch"),
t_test_ratio_text2)
})
#---- obtain same results ----
test_that("same results as previous run", {
expect_known_value(with_seed(seed = 2020,
prospective(effect_size = .3, power = .8, ratio_n = 1, B = 100, display_message = FALSE)$effect_info),
file = "test_cache/effect_info_single_pro_cor")
expect_known_value(with_seed(seed = 2020,
prospective(effect_size = .3, power = .8, ratio_n = 1, B = 100, display_message = FALSE,
test_method = "two_sample")$effect_info),
file = "test_cache/effect_info_single_pro_cohen")
expect_known_value(with_seed(seed = 2020,
prospective(effect_size = .3, power = .8, ratio_n = 1, B = 100, display_message = FALSE)$prospective_res),
file="test_cache/res_corr_single_pro")
expect_known_value(with_seed(seed = 2020,
prospective(effect_size = .3, power = .8, ratio_n = NULL, test_method = "one_sample", B = 100, display_message = FALSE)$prospective_res),
file="test_cache/res_one_sample_single_pro")
expect_known_value(with_seed(seed = 2020,
prospective(effect_size = .3, power = .8, test_method = "paired", B = 100, display_message = FALSE)$prospective_res),
file="test_cache/res_cohen_paired_pro")
expect_known_value(with_seed(seed = 2020,
prospective(effect_size = .3, power = .8, ratio_n = 1, test_method = "welch", ratio_sd = 1.5, B = 100, display_message = FALSE)$prospective_res),
file="test_cache/res_cohen_single_pro")
expect_known_value(with_seed(seed = 2020,
prospective(effect_size = .3, power = .8, ratio_n = 2, test_method = "two_sample", B = 100, display_message = FALSE)$prospective_res),
file="test_cache/res_cohen_ratio_n_pro")
expect_known_value(with_seed(seed = 2020,
prospective(effect_size = function(x) rnorm(x), test_method = "welch", ratio_sd = 1.5, power = .8, ratio_n = 1, B = 100, B_effect = 10, display_message = FALSE)$effect_info),
file = "test_cache/effect_info_dist_pro")
expect_known_value(with_seed(seed = 2020,
prospective(effect_size = function(x) rnorm(x), power = .8, ratio_n = 1,
B = 100, B_effect = 10, eval_power = "mean", display_message = FALSE)$prospective_res),
file = "test_cache/res_corr_dist_pro")
expect_known_value(with_seed(seed = 2020,
prospective(effect_size = function(x) rnorm(x), power = .8, ratio_n = NULL, test_method = "one_sample",
B = 100, B_effect = 10, eval_power = "mean", display_message = FALSE)$prospective_res),
file = "test_cache/res_one_sample_dist_pro")
expect_known_value(with_seed(seed = 2020,
prospective(effect_size = function(x) rnorm(x), power = .8, ratio_n = 1, test_method = "welch", ratio_sd = 1.5,
B = 100, B_effect = 10, eval_power = "mean", display_message = FALSE)$prospective_res),
file = "test_cache/res_cohen_dist_pro")
})
#----
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