featureMatrixJoint: featureMatrixJoint

In PeakSegJoint: Joint Peak Detection in Several ChIP-Seq Samples

featureMatrixJoint

Description

Compute the feature matrix for this joint segmentation problem.

Usage

featureMatrixJoint(profile.list)

Arguments

profile.list

Value

Numeric feature matrix (samples x features).

Author(s)

Toby Dylan Hocking

Examples

library(PeakSegJoint)
data(H3K36me3.TDH.other.chunk1, envir=environment())
lims <- c(43000000, 43200000) # left
some.counts <-
  subset(H3K36me3.TDH.other.chunk1$counts,
         lims[1] < chromEnd & chromStart < lims[2])
profile.list <- ProfileList(some.counts)
featureMatrixJoint(profile.list)

PeakSegJoint documentation built on April 25, 2023, 9:12 a.m.