Peptides: Calculate Indices and Theoretical Properties of Protein Sequences

Calculate physicochemical properties and indices from amino-acid sequences of peptides and proteins. Include also the option to read and plot output files from the 'GROMACS' molecular dynamics package.

AuthorDaniel Osorio, Paola Rondon-Villarreal and Rodrigo Torres.
Date of publication2017-01-17 00:40:25
MaintainerDaniel Osorio <daniel.osorio@correo.uis.edu.co>
LicenseGPL-2
Version1.1.2
https://github.com/dosorio/Peptides/

View on CRAN

Files in this package

Peptides
Peptides/inst
Peptides/inst/tests
Peptides/inst/tests/runit.lengthpep.R
Peptides/inst/tests/runit.aacomp.R
Peptides/inst/tests/runit.boman.R
Peptides/inst/tests/runit.pI.R
Peptides/inst/tests/runalltest.R
Peptides/inst/tests/runit.hydrophobicity.R
Peptides/inst/tests/runit.aindex.R
Peptides/inst/tests/runit.mw.R
Peptides/inst/tests/runit.instaindex.R
Peptides/inst/tests/runit.hmoment.R
Peptides/inst/tests/runit.charge.R
Peptides/inst/xvg-files
Peptides/inst/xvg-files/POPC.xvg
Peptides/inst/xvg-files/POPG.xvg
Peptides/inst/xvg-files/POPE.xvg
Peptides/inst/xvg-files/epot.xvg
Peptides/tests
Peptides/tests/doRUnit.R
Peptides/NAMESPACE
Peptides/NEWS
Peptides/data
Peptides/data/H.RData
Peptides/data/Kfactors.RData
Peptides/data/pepdata.RData
Peptides/data/datalist
Peptides/data/pKscales.RData
Peptides/R
Peptides/R/lengthpep.R Peptides/R/boman.R Peptides/R/membpos.R Peptides/R/plot.xvg.R Peptides/R/kidera.R Peptides/R/mw.R Peptides/R/pI.R Peptides/R/hmoment.R Peptides/R/aacomp.R Peptides/R/read.xvg.R Peptides/R/hydrophobicity.R Peptides/R/charge.R Peptides/R/aindex.R Peptides/R/instaindex.R
Peptides/README.md
Peptides/MD5
Peptides/DESCRIPTION
Peptides/man
Peptides/man/lengthpep.Rd Peptides/man/pKscales.Rd Peptides/man/mw.Rd Peptides/man/h.Rd Peptides/man/pepdata.Rd Peptides/man/charge.Rd Peptides/man/aacomp.Rd Peptides/man/read.xvg.Rd Peptides/man/instaindex.Rd Peptides/man/hydrophobicity.Rd Peptides/man/Kfactors.Rd Peptides/man/kidera.Rd Peptides/man/Peptides-package.Rd Peptides/man/membpos.Rd Peptides/man/hmoment.Rd Peptides/man/pI.Rd Peptides/man/boman.Rd Peptides/man/plot.xvg.Rd Peptides/man/aindex.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.