Calculate physicochemical properties and indices from amino-acid sequences of peptides and proteins. Include also the option to read and plot output files from the 'GROMACS' molecular dynamics package.
|Author||Daniel Osorio, Paola Rondon-Villarreal and Rodrigo Torres.|
|Date of publication||2017-01-17 00:40:25|
|Maintainer||Daniel Osorio <email@example.com>|
aacomp: Compute the amino acid composition of a protein sequence
aindex: Compute the aliphatic index of a protein sequence
boman: Compute the Boman (Potential Protein Interaction) index
charge: Compute the theoretical net charge of a protein sequence
h: 38 Hydrophobicity values for amino acids from various sources
hmoment: Compute the hydrophobic moment of a protein sequence
hydrophobicity: Compute the hydrophobicity index
instaindex: Compute the instability index of a protein sequence
Kfactors: The Ten Kidera Factors
kidera: Compute the Kidera factors
lengthpep: Compute the amino acid length of a protein sequence
membpos: Compute theoretically the class of a protein sequence
mw: Compute the molecular weight of a protein sequence
pepdata: Physicochemical properties and indices from 100 amino acid...
Peptides-package: Calculate Indices and Theoretical Properties of Protein...
pI: Compute the isoelectic point (pI) of a protein sequence
pKscales: 9 pKa scales for the side chain of charged amino acids from...
plot.xvg: Plot time series from GROMACS XVG files
read.xvg: Read XVG files from GROMACS Molecular Dynamics package