Peptides: Calculate Indices and Theoretical Properties of Protein Sequences

Calculate physicochemical properties and indices from amino-acid sequences of peptides and proteins. Include also the option to read and plot output files from the 'GROMACS' molecular dynamics package.

AuthorDaniel Osorio, Paola Rondon-Villarreal and Rodrigo Torres.
Date of publication2017-02-21 11:20:28
MaintainerDaniel Osorio <dcosorioh@unal.edu.co>
LicenseGPL-2
Version1.2.1
https://github.com/dosorio/Peptides/

View on CRAN

Functions

aacomp Man page
aindex Man page
autoCorrelation Man page
autoCovariance Man page
boman Man page
charge Man page
CP Man page
crossCovariance Man page
crucianiProperties Man page
H Man page
hmoment Man page
hydrophobicity Man page
instaindex Man page
K Man page
kideraFactors Man page
lengthpep Man page
membpos Man page
mw Man page
pepdata Man page
pI Man page
pK Man page
plot.xvg Man page
read.xvg Man page

Files

Peptides
Peptides/inst
Peptides/inst/CITATION
Peptides/inst/tests
Peptides/inst/tests/runit.lengthpep.R
Peptides/inst/tests/runit.aacomp.R
Peptides/inst/tests/runit.boman.R
Peptides/inst/tests/runit.pI.R
Peptides/inst/tests/runalltest.R
Peptides/inst/tests/runit.hydrophobicity.R
Peptides/inst/tests/runit.aindex.R
Peptides/inst/tests/runit.mw.R
Peptides/inst/tests/runit.instaindex.R
Peptides/inst/tests/runit.hmoment.R
Peptides/inst/tests/runit.charge.R
Peptides/inst/xvg-files
Peptides/inst/xvg-files/POPC.xvg
Peptides/inst/xvg-files/POPG.xvg
Peptides/inst/xvg-files/POPE.xvg
Peptides/inst/xvg-files/epot.xvg
Peptides/tests
Peptides/tests/doRUnit.R
Peptides/NAMESPACE
Peptides/NEWS
Peptides/data
Peptides/data/pK.RData
Peptides/data/K.RData
Peptides/data/H.RData
Peptides/data/CP.RData
Peptides/data/pepdata.RData
Peptides/data/datalist
Peptides/R
Peptides/R/data-pepdata.R Peptides/R/lengthpep.R Peptides/R/boman.R Peptides/R/membpos.R Peptides/R/plot.xvg.R Peptides/R/autocorrelation.R Peptides/R/crucianiProperties.R Peptides/R/data-CP.R Peptides/R/data-pK.R Peptides/R/data-K.R Peptides/R/crosscovariance.R Peptides/R/kideraFactors.R Peptides/R/data-H.R Peptides/R/mw.R Peptides/R/pI.R Peptides/R/hmoment.R Peptides/R/autocovariance.R Peptides/R/aacomp.R Peptides/R/read.xvg.R Peptides/R/hydrophobicity.R Peptides/R/charge.R Peptides/R/aindex.R Peptides/R/instaindex.R
Peptides/README.md
Peptides/MD5
Peptides/DESCRIPTION
Peptides/man
Peptides/man/lengthpep.Rd Peptides/man/crucianiProperties.Rd Peptides/man/mw.Rd Peptides/man/pK.Rd Peptides/man/pepdata.Rd Peptides/man/K.Rd Peptides/man/charge.Rd Peptides/man/aacomp.Rd Peptides/man/read.xvg.Rd Peptides/man/instaindex.Rd Peptides/man/crossCovariance.Rd Peptides/man/hydrophobicity.Rd Peptides/man/H.Rd Peptides/man/membpos.Rd Peptides/man/CP.Rd Peptides/man/hmoment.Rd Peptides/man/pI.Rd Peptides/man/autoCovariance.Rd Peptides/man/autoCorrelation.Rd Peptides/man/boman.Rd Peptides/man/plot.xvg.Rd Peptides/man/aindex.Rd Peptides/man/kideraFactors.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.