Calculate Indices and Theoretical Physicochemical Properties of Protein Sequences

aaComp | Compute the amino acid composition of a protein sequence |

AAdata | Properties, scales and indices for the 20 naturally occurring... |

aaDescriptors | Compute 66 descriptors for each amino acid of a protein... |

aIndex | Compute the aliphatic index of a protein sequence |

autoCorrelation | Compute the auto-correlation index of a protein sequence |

autoCovariance | Compute the auto-covariance index of a protein sequence |

blosumIndices | Compute the BLOSUM62 derived indices of a protein sequence |

boman | Compute the Boman (Potential Protein Interaction) index |

charge | Compute the theoretical net charge of a protein sequence |

crossCovariance | Compute the cross-covariance index of a protein sequence |

crucianiProperties | Compute the Cruciani properties of a protein sequence |

fasgaiVectors | Compute the FASGAI vectors of a protein sequence |

hmoment | Compute the hydrophobic moment of a protein sequence |

hydrophobicity | Compute the hydrophobicity index of a protein sequence |

instaIndex | Compute the instability index of a protein sequence |

kideraFactors | Compute the Kidera factors of a protein sequence |

lengthpep | Compute the amino acid length of a protein sequence |

membpos | Compute theoretically the class of a protein sequence |

mswhimScores | Compute the MS-WHIM scores of a protein sequence |

mw | Compute the molecular weight of a protein sequence |

pepdata | Physicochemical properties and indices from 100 amino acid... |

pI | Compute the isoelectic point (pI) of a protein sequence |

plotXVG | Plot time series from GROMACS XVG files |

protFP | Compute the protFP descriptors of a protein sequence |

readXVG | Read output data from a XVG format file. |

stScales | Compute the ST-scales of a protein sequence |

tScales | Compute the T-scales of a protein sequence |

vhseScales | Compute the VHSE-scales of a protein sequence |

zScales | Compute the Z-scales of a protein sequence |

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