| aaComp | Compute the amino acid composition of a protein sequence |
| AAdata | Properties, scales and indices for the 20 naturally occurring... |
| aaDescriptors | Compute 66 descriptors for each amino acid of a protein... |
| aaList | Return a vector with the 20 standard amino acids in upper... |
| aaSMILES | Create Smiles String from aminoacid sequences |
| aIndex | Compute the aliphatic index of a protein sequence |
| autoCorrelation | Compute the auto-correlation index of a protein sequence |
| autoCovariance | Compute the auto-covariance index of a protein sequence |
| blosumIndices | Compute the BLOSUM62 derived indices of a protein sequence |
| boman | Compute the Boman (Potential Protein Interaction) index |
| charge | Compute the theoretical net charge of a protein sequence |
| crossCovariance | Compute the cross-covariance index of a protein sequence |
| crucianiProperties | Compute the Cruciani properties of a protein sequence |
| fasgaiVectors | Compute the FASGAI vectors of a protein sequence |
| hmoment | Compute the hydrophobic moment of a protein sequence |
| hydrophobicity | Compute the hydrophobicity index of a protein sequence |
| instaIndex | Compute the instability index of a protein sequence |
| kideraFactors | Compute the Kidera factors of a protein sequence |
| lengthpep | Compute the amino acid length of a protein sequence |
| massShift | Calculate the mass difference of modified peptides. |
| membpos | Compute theoretically the class of a protein sequence |
| mswhimScores | Compute the MS-WHIM scores of a protein sequence |
| mw | Compute the molecular weight of a protein sequence |
| mz | Calculate the m/z for peptides. |
| pepdata | Physicochemical properties and indices from 100 amino acid... |
| pI | Compute the isoelectic point (pI) of a protein sequence |
| plotXVG | Plot time series from GROMACS XVG files |
| protFP | Compute the protFP descriptors of a protein sequence |
| readXVG | Read output data from a XVG format file. |
| stScales | Compute the ST-scales of a protein sequence |
| tScales | Compute the T-scales of a protein sequence |
| vhseScales | Compute the VHSE-scales of a protein sequence |
| zScales | Compute the Z-scales of a protein sequence |
