Man pages for Peptides
Calculate Indices and Theoretical Physicochemical Properties of Protein Sequences

aaCompCompute the amino acid composition of a protein sequence
AAdataProperties, scales and indices for the 20 naturally occurring...
aaDescriptorsCompute 66 descriptors for each amino acid of a protein...
aIndexCompute the aliphatic index of a protein sequence
autoCorrelationCompute the auto-correlation index of a protein sequence
autoCovarianceCompute the auto-covariance index of a protein sequence
blosumIndicesCompute the BLOSUM62 derived indices of a protein sequence
bomanCompute the Boman (Potential Protein Interaction) index
chargeCompute the theoretical net charge of a protein sequence
crossCovarianceCompute the cross-covariance index of a protein sequence
crucianiPropertiesCompute the Cruciani properties of a protein sequence
fasgaiVectorsCompute the FASGAI vectors of a protein sequence
hmomentCompute the hydrophobic moment of a protein sequence
hydrophobicityCompute the hydrophobicity index of a protein sequence
instaIndexCompute the instability index of a protein sequence
kideraFactorsCompute the Kidera factors of a protein sequence
lengthpepCompute the amino acid length of a protein sequence
membposCompute theoretically the class of a protein sequence
mswhimScoresCompute the MS-WHIM scores of a protein sequence
mwCompute the molecular weight of a protein sequence
pepdataPhysicochemical properties and indices from 100 amino acid...
pICompute the isoelectic point (pI) of a protein sequence
plotXVGPlot time series from GROMACS XVG files
protFPCompute the protFP descriptors of a protein sequence
readXVGRead output data from a XVG format file.
stScalesCompute the ST-scales of a protein sequence
tScalesCompute the T-scales of a protein sequence
vhseScalesCompute the VHSE-scales of a protein sequence
zScalesCompute the Z-scales of a protein sequence
Peptides documentation built on June 9, 2018, 1:04 a.m.