PhySortR: A Fast, Flexible Tool for Sorting Phylogenetic Trees
Version 1.0.7

Screens and sorts phylogenetic trees in both traditional and extended Newick format. Allows for the fast and flexible screening (within a tree) of Exclusive clades that comprise only the target taxa and/or Non- Exclusive clades that includes a defined portion of non-target taxa.

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AuthorTimothy Stephens [aut, cre, trl] (R port), Debashish Bhattacharya [aut], Mark Ragan [aut], Cheong Xin Chan [aut, cph] (Original Perl implementation)
Date of publication2016-05-16 14:33:13
MaintainerTimothy Stephens <timothy.stephens1@uqconnect.edu.au>
LicenseGPL (>= 3)
Version1.0.7
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("PhySortR")

Man pages

convert.eNewick: Converts Extended Newick Format to Traditional Newick Format
PhySortR: A Fast, Flexible Tool for Sorting Phylogenetic Trees
sortTrees: Sorts Phylogenetic Trees using Taxa Identifiers

Functions

PhySortR-package Man page
convert.eNewick Man page Source code
sortTrees Man page Source code

Files

inst
inst/extdata
inst/extdata/AllExclusiveTree1.tre
inst/extdata/NonExclusiveTree3.tre
inst/extdata/ExclusiveTree4.tre
inst/extdata/AllExclusiveTree2.tre
inst/extdata/NonExclusiveTree2.tre
inst/extdata/NonExclusiveTree4.tre
inst/extdata/ExclusiveTree3.tre
inst/extdata/NonExclusiveTree1.tre
inst/extdata/ExclusiveTree1.tre
inst/extdata/ExclusiveTree2.tre
NAMESPACE
R
R/convert.eNewick.R
R/sortTrees.R
MD5
DESCRIPTION
man
man/convert.eNewick.Rd
man/PhySortR.Rd
man/sortTrees.Rd
PhySortR documentation built on May 20, 2017, 1:05 a.m.