PhySortR: A Fast, Flexible Tool for Sorting Phylogenetic Trees

Screens and sorts phylogenetic trees in both traditional and extended Newick format. Allows for the fast and flexible screening (within a tree) of Exclusive clades that comprise only the target taxa and/or Non- Exclusive clades that includes a defined portion of non-target taxa.

Author
Timothy Stephens [aut, cre, trl] (R port), Debashish Bhattacharya [aut], Mark Ragan [aut], Cheong Xin Chan [aut, cph] (Original Perl implementation)
Date of publication
2016-05-16 14:33:13
Maintainer
Timothy Stephens <timothy.stephens1@uqconnect.edu.au>
License
GPL (>= 3)
Version
1.0.7

View on CRAN

Man pages

convert.eNewick
Converts Extended Newick Format to Traditional Newick Format
PhySortR
A Fast, Flexible Tool for Sorting Phylogenetic Trees
sortTrees
Sorts Phylogenetic Trees using Taxa Identifiers

Files in this package

PhySortR
PhySortR/inst
PhySortR/inst/extdata
PhySortR/inst/extdata/AllExclusiveTree1.tre
PhySortR/inst/extdata/NonExclusiveTree3.tre
PhySortR/inst/extdata/ExclusiveTree4.tre
PhySortR/inst/extdata/AllExclusiveTree2.tre
PhySortR/inst/extdata/NonExclusiveTree2.tre
PhySortR/inst/extdata/NonExclusiveTree4.tre
PhySortR/inst/extdata/ExclusiveTree3.tre
PhySortR/inst/extdata/NonExclusiveTree1.tre
PhySortR/inst/extdata/ExclusiveTree1.tre
PhySortR/inst/extdata/ExclusiveTree2.tre
PhySortR/NAMESPACE
PhySortR/R
PhySortR/R/convert.eNewick.R
PhySortR/R/sortTrees.R
PhySortR/MD5
PhySortR/DESCRIPTION
PhySortR/man
PhySortR/man/convert.eNewick.Rd
PhySortR/man/PhySortR.Rd
PhySortR/man/sortTrees.Rd