convert.eNewick: Converts Extended Newick Format to Traditional Newick Format

In PhySortR: A Fast, Flexible Tool for Sorting Phylogenetic Trees

Description

Takes a phylogenetic tree in extended Newick format and converts it to traditional Newick format that can be directly manipulated by packages such as ape and phytools.

Usage

convert.eNewick(eNewick)

Arguments

eNewick

phylogenetic tree in extended Newick format.

Value

phylogenetic tree in traditional Newick format.

Examples

 ### Converts the phylogenetic tree into traditional Newick format. 
 tree <- "((A:0.1,(B:0.3,C:0.2):0.2[60]):0.4[100],(E:0.12,F:0.09):0.4[100]);"
 new.tree <- convert.eNewick(tree)
 new.tree

Example output

sh: 1: cannot create /dev/null: Permission denied
sh: 1: cannot create /dev/null: Permission denied
[1] "((A:0.1,(B:0.3,C:0.2)60:0.2)100:0.4,(E:0.12,F:0.09)100:0.4);"

PhySortR documentation built on May 1, 2019, 10:56 p.m.