Description Usage Author(s) References See Also
This table contains 9 variables for each genomic position
chrpos
, char, of the form chrN:XXXXXXXXX defining genomic position
N0
, integer, the coverture in the controls
E0
, integer, the number of errors in the controls
p.sain
, numeric, the ratio E0/N0
up.sain
, numeric, the 95th quantile of the Binomial with parameter N0 and E0/N0
E0indel
, integer, the amount of indel
indel.p.sain
, numeric, the ration E0indel/N0
indel.up.sain
, numeric, the 95th quantile of the Binomial with parameter N0 and E0indel/N0
hotspot
, char, either 'Non-hotspot' or 'Hotspot' depending if the genomic position is known as hotspot or not.
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N. P<c3><a9>cuchet, P. Laurent-Puig and Y. Rozenholc
Analysis of base-position error rate of next-generation sequencing to detect tumor mutations in circulating DNA N. P<c3><a9>cuchet, Y. Rozenholc, E. Zonta, D. Pietraz, A. Didelot, P. Combe, L. Gibault, J-B. Bachet, V. Taly, E. Fabre, H. Blons, P. Laurent-Puig in Clinical Chemistry
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