GEX_scatter_coexpression: Scatter plot for coexpression of two selected genes

In Platypus: Single-Cell Immune Repertoire and Gene Expression Analysis

Scatter plot for coexpression of two selected genes

Description

Plots a composite figure showing single marker expression as histograms and coexpression as a scatterplot.

Usage

GEX_scatter_coexpression(GEX, gene.1, gene.2, color.theme)

Arguments

GEX	GEX seurat object generated with VDJ_GEX_matrix
gene.1	Character. Name of a gene in rownames(VDJ.matrix)
gene.2	Character. Name of a gene in rownames(VDJ.matrix)
color.theme	Character. A color to use for the composite plot

Value

Returns a gridplot showing coexpression scatterplot as well as histograms of gene.1 and gene.2

Examples

gene1 <- "CD24A"
gene2 <- "CD83"
GEX_scatter_coexpression(GEX = Platypus::small_vgm[[2]], gene1,gene2)

Platypus documentation built on Oct. 18, 2024, 5:08 p.m.