VDJ_germline: Infer germline from the desired software/caller

In Platypus: Single-Cell Immune Repertoire and Gene Expression Analysis

Infer germline from the desired software/caller

Description

Function to infer the germline from the tree

Usage

VDJ_germline(VDJ, germlines.from, VDJ.only)

Arguments

VDJ	VDJ dataframe obtained after calling VDJ_call_MIXCR or any other germline you want to use
germlines.from	MIXCR or any other germline caller - default: MIXCR
VDJ.only	boolean - if T, only Heavy Chain (VDJ) germline will be inferred

Value

VDJ with the updated germline

Examples

try({
VDJ_germline(VDJ, germlines.from='MIXCR',
VDJ.only=T)
})

Platypus documentation built on Oct. 18, 2024, 5:08 p.m.