Man pages for PoDBAY
Vaccine Efficacy Estimation Package
| assignPoD | Assign probability of disease (PoD) |
| BlindSampling | Immunogenicity subset: vaccinated, control, non-diseased |
| ClinicalTrial | Clinical trial: estimation of case-count efficacy |
| ClinicalTrialCoverage | Clinical trial function expanded for usage in simulations... |
| control | Dataset containing the information for control subjects |
| cppMLE | Maximum likelihood estimation: cpp |
| cppPoD | Probability of disease calculation |
| diseased | Dataset containing the information for diseased subjects |
| EfficacyCI | PoDBAY efficacy summary: mean, median, confidence intervals |
| EfficacyCICoverage | PoDBAY efficacy summary at three confidence levels |
| efficacyComputation | PoDBAY efficacy equation |
| efficacySet | Estimated PoDBAY efficacies |
| efficacySquaredError | Optimization objective function: efficacy squared error |
| estimatedParameters | Estimated PoD curve parameters |
| ExpectedPoD | Expected probability of disease |
| ExtractDiseased | Diseased subjects extraction |
| ExtractNondiseased | Non-diseased subjects extraction |
| fitPoD | PoD curve: fitting function |
| GenerateNondiseased | Generation of upsampled non-diseased subjects titers |
| generatePopulation | Population class object generation |
| getDiseasedCount | Diseased count |
| getDiseasedTiters | Diseased titers |
| getNondiseasedCount | Non-diseased count |
| getNondiseasedTiters | Non-diseased titers |
| getTiters | Subject level titers |
| getUnknown | Generate unknown |
| ImmunogenicitySubset | Immunogenicity subset |
| incorrectInput | Error message |
| incorrectPopulationInput | Population class error message |
| JitterMean | Population mean jittering |
| MLE | Maximum Likelihood estimation |
| nondiseased | Dataset containing the information for non-diseased subjects |
| numToBool | Numeric to boolean |
| PmaxEstimation | PoD curve paramater, pmax, estimation |
| PoD | Probability of disease calculation |
| PoDBAY | PoDBAY |
| PoDBAYEfficacy | PoDBAY efficacy estimation |
| PoDCI | PoD curve confidence ribbon |
| PoDCurvePlot | PoD curve: plot |
| PoDEfficacySquaredError | Optimization function: finds PoD curve paramaters (et50,... |
| PoDMLE | Setup for the maximum likelihood estimation (MLE) |
| PoDParamEstimation | PoD curve parameters estimation |
| PoDParamPointEstimation | PoD curve point estimate |
| PoDParams | PoD curve parameters |
| PoDParamsCI | Confidence intervals of PoD curve parameters |
| PoDParamsCICoverage | Confidence intervals of PoD curve parameters at three... |
| popFun | Population function |
| Population-class | Population class |
| popX | Add noise to population titers |
| vaccinated | Dataset containing the information for vaccinated subjects |
| waldCI | Wald confidence interval estimation |
