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R/batchconvertjack.R
In PopGenKit: Useful functions for (batch) file conversion and data resampling in microsatellite datasets
batchconvertjack <-
function(ndigit=3, rm.loci)
{
filelist=list.files(pattern='[.gen]$')
nbfiles=length(filelist)
for (t in 1 :nbfiles)
{
convertjack(filelist[t],ndigit,rm.loci)
}
#créer le fichier batch pour Arlequin
arlfilelist=gsub(pattern='[.]gen', replacement='_jack.arp',filelist)
write.table(arlfilelist, file='batchjack.arb', quote=F, row.names=F, col.names=F, sep='\r')
}
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PopGenKit documentation built on May 2, 2019, 3:33 p.m.
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batchconvertjack <-
function(ndigit=3, rm.loci)
{
filelist=list.files(pattern='[.gen]$')
nbfiles=length(filelist)
for (t in 1 :nbfiles)
{
convertjack(filelist[t],ndigit,rm.loci)
}
#créer le fichier batch pour Arlequin
arlfilelist=gsub(pattern='[.]gen', replacement='_jack.arp',filelist)
write.table(arlfilelist, file='batchjack.arb', quote=F, row.names=F, col.names=F, sep='\r')
}
Try the PopGenKit package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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