Man pages for PopGenReport
A Simple Framework to Analyse Population and Landscape Genetic Data
| addline | Function to add lines to landscape |
| addpoly | Function to add a polygon to a landscape |
| allele.dist | Counts and visualises allele frequencies across loci and... |
| allel.rich | Calculates the allelic richness for a genind object |
| bilby | Bilby data set |
| costdistances | Calculates cost distances for a given landscape (resistance... |
| emigration | Function to execute emigration on a pops object |
| gd.kosman | Individual genetic distance calculation based on Kosman &... |
| gd.smouse | Individual genetic distance calculation based on Smouse and... |
| genleastcost | Least-cost path analysis based on a friction matrix |
| init.popgensim | Initialise a spatial meta-population for a popgen simulation |
| landgen | A simulated genind data set with spatial coordinates |
| landgenreport | Create a landscape genetic report |
| lgrMMRR | Multiple Matrix Regression with Randomization analysis |
| mutation | Function to execute mutation on a pop data.frame |
| null.all | Checks for the presence of and determine the frequency of... |
| opt.landgen | Function for optimising a landscape genetic analysis based on... |
| p2p | Function to calculate dispersal distances based on cost... |
| pairwise.fstb | Calculates pairwise fsts using a genind object (very fast) |
| pairwise.propShared | Calculates proportion of shared alleles per pairs of... |
| popgenreport | This is the main function of the package. It analyses an... |
| pops2genind | Function converts pops to a genind object |
| possums | A genlight object created via the read.genetable functions... |
| read.genetable | Function to convert textfiles into a genind object (the... |
| reproduction | Function to execute reproduction on a pop data.frame |
| run.popgensim | Run a time-forward popgen simulation |
| spautocor | Spatial autocorrelation following Smouse and Pekall 1999 |
| wassermann | Partial Mantel tests on costdistance matrices |
