pairwise.propShared: Calculates proportion of shared alleles per pairs of...
In PopGenReport: A Simple Framework to Analyse Population and Landscape Genetic Data
View source: R/pairwise.propShared.r
pairwise.propShared R Documentation
Calculates proportion of shared alleles per pairs of populations
Description
Calculates proportion of shared alleles per pairs of populations based on the minima of allele frequency for each allel (then summed and averaged over loci). Returns a similarity matrix (upper diagonal of the pairwise matrix.
Usage
pairwise.propShared(gi)
Arguments
gi
a genind object with at least two populations
Value
a matrix of proportion of shared alleles between populations
PopGenReport documentation built on Oct. 11, 2023, 9:07 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/pairwise.propShared.r
| pairwise.propShared | R Documentation |
Calculates proportion of shared alleles per pairs of populations
Description
Calculates proportion of shared alleles per pairs of populations based on the minima of allele frequency for each allel (then summed and averaged over loci). Returns a similarity matrix (upper diagonal of the pairwise matrix.
Usage
pairwise.propShared(gi)
Arguments
gi |
a genind object with at least two populations |
Value
a matrix of proportion of shared alleles between populations
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.