final.tsd.in: Analysis of second stage data of 2-stage 2x2 crossover...

Description Usage Arguments Details Value Author(s) References See Also Examples

Description

Following the design scheme according to power.tsd.in the function performs the analysis after the second stage has been performed.

Usage

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final.tsd.in(alpha, weight, max.comb.test = TRUE, GMR1, CV1, n1, df1 = NULL,
                SEM1 = NULL, GMR2, CV2, n2, df2 = NULL, SEM2 = NULL, 
                theta1, theta2)

Arguments

alpha

If one element is given, the overall one-sided significance level (not the adjusted level for stage 2). If two elements are given, the adjusted one-sided alpha levels for stage 1 and stage 2, respectively.
If missing, defaults to 0.05.

weight

Pre-defined weight(s) of stage 1. Note that using the notation from Maurer et al weight corresponds to information fraction, other literature may refer to sqrt(weight) as being the weight. weight must either contain one element (in case of max.comb.test = FALSE) or two elements (in case of max.comb.test = TRUE).
If missing, defaults to 0.5 for max.comb.test = FALSE and to c(0.5, 0.25) for max.comb.test = TRUE.

max.comb.test

Logical; if TRUE (default) the maximum combination test will be used, otherwise the standard combination test.

GMR1

Observed ratio of geometric means (T/R) of stage 1 data.

CV1

Observed coefficient of variation of the intra-subject variability of stage 1 (use e.g., 0.3 for 30%).

n1

Sample size of stage 1.

df1

Optional; Error degrees of freedom of stage 1 that can be specified in addition to n1.

SEM1

Optional; Standard error of the difference of means of stage 1 that can be specified in addition to CV1. Must be on additive scale (i.e. usually log-scale).

GMR2

Observed ratio of geometric means (T/R) of (only) stage 2 data.

CV2

Observed coefficient of variation of the intra-subject variability of (only) stage 2 (use e.g., 0.3 for 30%).

n2

Sample size of stage 2.

df2

Optional; Error degrees of freedom of (only) stage 2 that can be specified in addition to n2.

SEM2

Optional; Standard error of the difference of means of (only) stage 2 that can be specified in addition to CV2. Must be on additive scale (i.e. usually log-scale).

theta1

Lower bioequivalence limit. Defaults to 0.8.

theta2

Upper bioequivalence limit. Defaults to 1.25.

Details

The observed values (GMR1, GMR2 etc.) should be obtained for each stage separately; this may be done via the usual ANOVA approach.

The optional arguments df1, SEM1, df2 and SEM2 require a somewhat advanced knowledge (provided in the raw output from for example the software SAS, or may be obtained via emmeans::emmeans). However, it has the advantage that if there were missing data the exact degrees of freedom and standard error of the difference can be used, the former possibly being non-integer valued (e.g. if the Kenward-Roger method was used).

Value

Returns an object of class "evaltsd" with all the input arguments and results as components. As part of the input arguments a component cval is also presented, containing the critical values for stage 1 and 2 according to the input based on alpha, weight and max.comb.test.
The class "evaltsd" has an S3 print method.

The results are in the components:

z1

Combination test statistic for first null hypothesis (standard combination test statistic in case of max.comb.test = FALSE or maximum combination test statistic in case of max.comb.test = TRUE)

z2

Combination test statistic for second null hypothesis (standard combination test statistic in case of max.comb.test = FALSE or maximum combination test statistic in case of max.comb.test = TRUE)

RCI

(Exact) repeated confidence interval for stage 2.

MEUE

Median unbiased estimate as estimate for the overall geometric mean ratio

stop_BE

Logical, indicating whether BE can be concluded after stage 2 or not.

Author(s)

B. Lang

References

Patterson SD, Jones B. Bioequivalence and Statistics in Clinical Pharmacology.
Boca Raton: CRC Press; 2nd edition 2017.

Maurer W, Jones B, Chen Y. Controlling the type 1 error rate in two-stage sequential designs when testing for average bioequivalence.
Stat Med. 2018;1–21. doi: 10.1002/sim.7614

Wassmer G, Brannath W. Group Sequential and Confirmatory Adaptive Designs in Clinical Trials.
Springer 2016. doi: 10.1007/978-3-319-32562-0

See Also

power.tsd.in, interim.tsd.in

Examples

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# Example from Maurer et al.
## Not run: 
# Not run due to CRAN policy for run-time of examples
final.tsd.in(GMR1 = exp(0.0424), CV1 = 0.3682, n1 = 20, 
             GMR2 = exp(-0.0134), CV2 = 0.3644, n2 = 36)
## End(Not run)

Power2Stage documentation built on April 3, 2018, 9:04 a.m.