MI: Calculate mutual information.
In ProgModule: Identification of Prognosis-Related Mutually Exclusive Modules
MI R Documentation
Calculate mutual information.
Description
The function ‘MI' is used to calculate the mutual information score between samples’ survival status and mutation status.
Usage
MI(mylist1, mylist2)
Arguments
mylist1
Is input a list of samples' survival status.
mylist2
Is input a list of samples' mutation status.
Value
The mutual information score
Examples
#load the data
data(mut_status)
sur<-system.file("extdata","sur.csv",package = "ProgModule")
sur<-read.delim(sur,sep=",",header=TRUE,row.names = 1)
#perform the function 'MI'
mut_matrix<-MI(mylist1 = as.numeric(mut_status[1,]),mylist2 = sur[,1])
ProgModule documentation built on May 29, 2024, 9:16 a.m.
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| MI | R Documentation |
Calculate mutual information.
Description
The function ‘MI' is used to calculate the mutual information score between samples’ survival status and mutation status.
Usage
MI(mylist1, mylist2)
Arguments
mylist1 |
Is input a list of samples' survival status. |
mylist2 |
Is input a list of samples' mutation status. |
Value
The mutual information score
Examples
#load the data
data(mut_status)
sur<-system.file("extdata","sur.csv",package = "ProgModule")
sur<-read.delim(sur,sep=",",header=TRUE,row.names = 1)
#perform the function 'MI'
mut_matrix<-MI(mylist1 = as.numeric(mut_status[1,]),mylist2 = sur[,1])
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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