get_univarCox_result: Get univarCox result.

In ProgModule: Identification of Prognosis-Related Mutually Exclusive Modules

Get univarCox result.

Description

The function 'get_univarCox_result' is used to calculate the result of Cox univariate analysis.

Usage

get_univarCox_result(freq_matrix, sur)

Arguments

freq_matrix	The mutations matrix,generated by 'get_mut_status'.
sur	A nx2 data frame of samples' survival data,the first line is samples' survival event and the second line is samples' overall survival.

Value

The result of Cox univariate analysis.

Examples

#load the data
data(mut_status)
sur<-system.file("extdata","sur.csv",package ="ProgModule")
sur<-read.delim(sur,sep=",",header=TRUE,row.names=1)
#perform the function `get_univarCox_result`.
univarCoxresult.example<-get_univarCox_result(freq_matrix=mut_status,sur)

ProgModule documentation built on May 29, 2024, 9:16 a.m.