get_mut_survivalresult: Plot Kaplan-Meier survival curve.

In ProgModule: Identification of Prognosis-Related Mutually Exclusive Modules

Plot Kaplan-Meier survival curve.

Description

The function 'get_mut_survivalresult' uses to draw the Kaplan-Meier survival curve based on the mutated status of candidate module.

Usage

get_mut_survivalresult(module, freq_matrix, sur)

Arguments

module	The gene module,generated by 'get_final_candidate_module'.
freq_matrix	The mutations matrix,generated by 'get_mut_status'.
sur	A nx2 data frame of samples' survival data,the first line is samples' survival event and the second line is samples' overall survival.

Value

No return value

Examples

#load the data.
data(mut_status)
sur<-system.file("extdata","sur.csv",package="ProgModule")
sur<-read.delim(sur,sep=",",header=TRUE,row.names=1)
data(final_candidate_module)
#perform the function `get_mut_survivalresult`.
get_mut_survivalresult(module=final_candidate_module,freq_matrix=mut_status,sur)

ProgModule documentation built on May 29, 2024, 9:16 a.m.