ProteinDescriptors: Generates Various Protein Descriptors for Machine Learning Algorithms

An implementation of protein descriptors in R. These descriptors combine the advantages of being fixed length and including partial sequential effect: Various length of protein sequences are described with fixed length vectors that are suitable for machine learning algorithms, and still includes partial sequential effect.

AuthorBerat Kurar [aut, cre], Sami Abu Sneineh [aut], Yaqoub Ashhab [aut]
Date of publication2016-03-03 23:40:47
MaintainerBerat Kurar <beratkurar@gmail.com>
LicenseBSD 3-clause License + file LICENSE
Version0.1.0

View on CRAN

Functions

DiscreteBlosum Man page
DiscreteSequentialBlosumTwoParts Man page
DiscreteSequentialSparseFiveParts Man page
DiscreteSequentialSparseFourParts Man page
DiscreteSequentialSparseThreeParts Man page
DiscreteSequentialSparseTwoParts Man page
DiscreteSequentialTdTwoParts Man page
DiscreteSparse Man page
DiscreteTd Man page
IncrementalDiscreteSparse Man page
LastFirstDiscreteSparse Man page
SequentialBlosum Man page
SequentialDiscreteBlosum Man page
SequentialDiscreteSparse Man page
SequentialDiscreteTd Man page
SequentialSparse Man page
SequentialTd Man page
ShiftedDiscreteSparse Man page

Files

ProteinDescriptors
ProteinDescriptors/NAMESPACE
ProteinDescriptors/R
ProteinDescriptors/R/DiscreteTd.R ProteinDescriptors/R/LastFirstDiscreteSparse.R ProteinDescriptors/R/DiscreteSequentialBlosumTwoParts.R ProteinDescriptors/R/IncrementalDiscreteSparse.R ProteinDescriptors/R/SequentialDiscreteBlosum.R ProteinDescriptors/R/DiscreteSequentialSparseThreeParts.R ProteinDescriptors/R/DiscreteBlosum.R ProteinDescriptors/R/ShiftedDiscreteSparse.R ProteinDescriptors/R/DiscreteSequentialSparseFiveParts.R ProteinDescriptors/R/SequentialDiscreteSparse.R ProteinDescriptors/R/DiscreteSequentialSparseFourParts.R ProteinDescriptors/R/SequentialSparse.R ProteinDescriptors/R/DiscreteSparse.R ProteinDescriptors/R/SequentialBlosum.R ProteinDescriptors/R/DiscreteSequentialTdTwoParts.R ProteinDescriptors/R/SequentialDiscreteTd.R ProteinDescriptors/R/DiscreteSequentialSparseTwoParts.R ProteinDescriptors/R/SequentialTd.R
ProteinDescriptors/MD5
ProteinDescriptors/DESCRIPTION
ProteinDescriptors/man
ProteinDescriptors/man/DiscreteSequentialSparseFiveParts.Rd ProteinDescriptors/man/SequentialDiscreteTd.Rd ProteinDescriptors/man/SequentialDiscreteBlosum.Rd ProteinDescriptors/man/DiscreteSparse.Rd ProteinDescriptors/man/IncrementalDiscreteSparse.Rd ProteinDescriptors/man/SequentialDiscreteSparse.Rd ProteinDescriptors/man/DiscreteTd.Rd ProteinDescriptors/man/DiscreteBlosum.Rd ProteinDescriptors/man/SequentialSparse.Rd ProteinDescriptors/man/DiscreteSequentialSparseTwoParts.Rd ProteinDescriptors/man/DiscreteSequentialTdTwoParts.Rd ProteinDescriptors/man/DiscreteSequentialSparseThreeParts.Rd ProteinDescriptors/man/SequentialTd.Rd ProteinDescriptors/man/DiscreteSequentialSparseFourParts.Rd ProteinDescriptors/man/LastFirstDiscreteSparse.Rd ProteinDescriptors/man/DiscreteSequentialBlosumTwoParts.Rd ProteinDescriptors/man/SequentialBlosum.Rd ProteinDescriptors/man/ShiftedDiscreteSparse.Rd
ProteinDescriptors/LICENSE

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