ProteinDescriptors: Generates Various Protein Descriptors for Machine Learning Algorithms

An implementation of protein descriptors in R. These descriptors combine the advantages of being fixed length and including partial sequential effect: Various length of protein sequences are described with fixed length vectors that are suitable for machine learning algorithms, and still includes partial sequential effect.

AuthorBerat Kurar [aut, cre], Sami Abu Sneineh [aut], Yaqoub Ashhab [aut]
Date of publication2016-03-03 23:40:47
MaintainerBerat Kurar <beratkurar@gmail.com>
LicenseBSD 3-clause License + file LICENSE
Version0.1.0

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Files in this package

ProteinDescriptors
ProteinDescriptors/NAMESPACE
ProteinDescriptors/R
ProteinDescriptors/R/DiscreteTd.R ProteinDescriptors/R/LastFirstDiscreteSparse.R ProteinDescriptors/R/DiscreteSequentialBlosumTwoParts.R ProteinDescriptors/R/IncrementalDiscreteSparse.R ProteinDescriptors/R/SequentialDiscreteBlosum.R ProteinDescriptors/R/DiscreteSequentialSparseThreeParts.R ProteinDescriptors/R/DiscreteBlosum.R ProteinDescriptors/R/ShiftedDiscreteSparse.R ProteinDescriptors/R/DiscreteSequentialSparseFiveParts.R ProteinDescriptors/R/SequentialDiscreteSparse.R ProteinDescriptors/R/DiscreteSequentialSparseFourParts.R ProteinDescriptors/R/SequentialSparse.R ProteinDescriptors/R/DiscreteSparse.R ProteinDescriptors/R/SequentialBlosum.R ProteinDescriptors/R/DiscreteSequentialTdTwoParts.R ProteinDescriptors/R/SequentialDiscreteTd.R ProteinDescriptors/R/DiscreteSequentialSparseTwoParts.R ProteinDescriptors/R/SequentialTd.R
ProteinDescriptors/MD5
ProteinDescriptors/DESCRIPTION
ProteinDescriptors/man
ProteinDescriptors/man/DiscreteSequentialSparseFiveParts.Rd ProteinDescriptors/man/SequentialDiscreteTd.Rd ProteinDescriptors/man/SequentialDiscreteBlosum.Rd ProteinDescriptors/man/DiscreteSparse.Rd ProteinDescriptors/man/IncrementalDiscreteSparse.Rd ProteinDescriptors/man/SequentialDiscreteSparse.Rd ProteinDescriptors/man/DiscreteTd.Rd ProteinDescriptors/man/DiscreteBlosum.Rd ProteinDescriptors/man/SequentialSparse.Rd ProteinDescriptors/man/DiscreteSequentialSparseTwoParts.Rd ProteinDescriptors/man/DiscreteSequentialTdTwoParts.Rd ProteinDescriptors/man/DiscreteSequentialSparseThreeParts.Rd ProteinDescriptors/man/SequentialTd.Rd ProteinDescriptors/man/DiscreteSequentialSparseFourParts.Rd ProteinDescriptors/man/LastFirstDiscreteSparse.Rd ProteinDescriptors/man/DiscreteSequentialBlosumTwoParts.Rd ProteinDescriptors/man/SequentialBlosum.Rd ProteinDescriptors/man/ShiftedDiscreteSparse.Rd
ProteinDescriptors/LICENSE

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