SequentialTd: Sequential 3D descriptor.

In ProteinDescriptors: Generates Various Protein Descriptors for Machine Learning Algorithms

Description

SequentialTd returns the concatenation of 3D descriptors of amino acids in a protein sequence.

Usage

SequentialTd(x)

Arguments

x	A string of amino acid letters

Value

A 3*n dimensional numeric vector where n is the protein length

Examples

x = "LALHLLLLHMHMMDRSLLLH"
SequentialTd(x)

Example output

 [1] -7.582 -3.724 -2.740  0.189 -3.989  1.989 -7.582 -3.724 -2.740  3.488
[11]  6.754 -2.703 -7.582 -3.724 -2.740 -7.582 -3.724 -2.740 -7.582 -3.724
[21] -2.740 -7.582 -3.724 -2.740  3.488  6.754 -2.703 -5.200 -2.547 -3.561
[31]  3.488  6.754 -2.703 -5.200 -2.547 -3.561 -5.200 -2.547 -3.561  7.781
[41]  0.030  1.821  5.007  0.834 -2.709  4.201 -1.948  1.453 -7.582 -3.724
[51] -2.740 -7.582 -3.724 -2.740 -7.582 -3.724 -2.740  3.488  6.754 -2.703

ProteinDescriptors documentation built on May 1, 2019, 9:22 p.m.