publish.CauseSpecificCox: Tabulizing cause-specific hazard ratio from all causes with...

In Publish: Format Output of Various Routines in a Suitable Way for Reports and Publication

Tabulizing cause-specific hazard ratio from all causes with confidence limits and Wald test p-values.

Description

Publish cause-specific Cox models

Usage

## S3 method for class 'CauseSpecificCox'
publish(
  object,
  cause,
  confint.method,
  pvalue.method,
  factor.reference = "extraline",
  units = NULL,
  print = TRUE,
  ...
)

Arguments

object	Cause-specific hazard model obtained with CSC.
cause	Show a table for this cause. If omitted, list all causes.
confint.method	See regressionTable
pvalue.method	See regressionTable
factor.reference	See regressionTable
units	See regressionTable
print	If TRUE print the table(s).
...	passed on to control formatting of parameters, confidence intervals and p-values. See summary.regressionTable.

Details

The cause-specific hazard ratio's are combined into one table.

Value

Table with cause-specific hazard ratios, confidence limits and p-values.

Author(s)

Thomas Alexander Gerds <[e-mail]>

Examples

if (requireNamespace("riskRegression",quietly=TRUE)){
library(riskRegression)
library(prodlim)
library(survival)
data(Melanoma,package="riskRegression")
fit1 <- CSC(list(Hist(time,status)~sex,Hist(time,status)~invasion+epicel+age),
            data=Melanoma)
publish(fit1)
publish(fit1,pvalue.stars=TRUE)
publish(fit1,factor.reference="inline",units=list("age"="years"))

# wide format (same variables in both Cox regression formula) 
fit2 <- CSC(Hist(time,status)~invasion+epicel+age, data=Melanoma)
publish(fit2)

# with p-values
x <- publish(fit2,print=FALSE)
table <- cbind(x[[1]]$regressionTable,
           x[[2]]$regressionTable[,-c(1,2)])
}

Publish documentation built on Jan. 18, 2023, 1:08 a.m.