predatorFAs: Predator fatty acid signatures. Each predator signature is a...

Description Usage Format Details

Description

Fatty acid signatures are subsetted for the chosen fatty acid set and renormalized during the modelling so there is no need to subset and/or renormalize prior to running p.QFASA. However, make sure that the the same fatty acids appear in the predator and prey files (if a FA appears in one but not the other the code will give you an error).

Usage

1

Format

A data frame with 10 observations and 70 variables:

SampleCode

TODO

AnimalCode

TODO

SampleGroup

TODO

Biopsy

TODO

c12.0
c13.0
Iso14
c14.0
c14.1w9
c14.1w7
c14.1w5
Iso15
Anti15
c15.0
c15.1w8
c15.1w6
Iso16
c16.0
c16.1w11
c16.1w9
c16.1w7
c7Mec16.0
c16.1w5
c16.2w6
Iso17
c16.2w4
c16.3w6
c17.0
c16.3w4
c17.1
c16.4w3
c16.4w1
c18.0
c18.1w13
c18.1w11
c18.1w9
c18.1w7
c18.1w5
c18.2d5.11
c18.2w7
c18.2w6
c18.2w4
c18.3w6
c18.3w4
c18.3w3
c18.3w1
c18.4w3
c18.4w1
c20.0
c20.1w11
c20.1w9
c20.1w7
c20.2w9
c20.2w6
c20.3w6
c20.4w6
c20.3w3
c20.4w3
c20.5w3
c22.1w11
c22.1w9
c22.1w7
c22.2w6
c21.5w3
c22.4w6
c22.5w6
c22.4w3
c22.5w3
c22.6w3
c24.1w9

Details

Unlike the original QFASApack code the predator data can contain as much tombstone data in columns as you wish but the predator FA signatures must be extracted as a separate input in order to run in p.QFASA.


QFASA documentation built on June 15, 2019, 1:03 a.m.