WenF: To perform QTL mapping with Wen method

In QTL.gCIMapping.GUI: QTL Genome-Wide Composite Interval Mapping with Graphical User Interface

Description

An efficient multi-locus mixed model framework for the detection of small and linked QTLs in F2

Usage

WenF(pheRaw,genRaw,mapRaw1,yygg1,cov_en,WalkSpeed,CriLOD,dir)

Arguments

pheRaw	phenotype matrix.
genRaw	genotype matrix.
mapRaw1	linkage map matrix.
yygg1	the transformed covariate matrix .
cov_en	raw covariate matrix.
WalkSpeed	Walk speed for Genome-wide Scanning.(WalkSpeed=1).
CriLOD	Critical LOD scores for significant QTL (CriLOD=2.5).
dir	file path in your computer.

Author(s)

Zhang Ya-Wen, Wen Yang-Jun, Wang Shi-Bo, Zhang Yuan-Ming
Maintainer: Yuanming Zhang<[e-mail]>

Examples

## Not run: 
data(genf2)
data(phef2)
data(mapf2)
wf<-WenF(pheRaw=phef2,genRaw=genf2,mapRaw1=mapf2,
yygg1=NULL,cov_en=NULL,WalkSpeed=1,CriLOD=2.5,dir=tempdir())

## End(Not run)

Example output

Loading required package: shiny
Loading required package: MASS
Loading required package: qtl
 --Read the following data:
	 76  individuals
	 217  markers
	 1  phenotypes
 --Cross type: f2 

QTL.gCIMapping.GUI documentation built on Oct. 23, 2020, 8:13 p.m.