API for Qploidy
Estimation of Ploidy and Detection of Aneuploidy Using Genotyping Data
| Global functions | |
|---|---|
| .onAttach | Source code |
| all_resolutions_plots | Man page Source code |
| area_estimate_ploidy | Man page Source code |
| clean_summary | Man page Source code |
| find_header_line | Man page Source code |
| get_R_theta | Man page Source code |
| get_aneuploids | Man page Source code |
| get_baf | Man page Source code |
| get_baf_par | Man page Source code |
| get_centers | Man page Source code |
| get_zscore | Man page Source code |
| is_compressed_file | Man page Source code |
| merge_arms_format | Man page Source code |
| mode | Man page Source code |
| pascalTriangle | Man page Source code |
| plot_baf | Man page Source code |
| plot_baf_hist | Man page Source code |
| plot_baf_with_ploidy_guides | Man page Source code |
| plot_qploidy_standardization | Man page Source code |
| plot_xy_with_ploidy_guides | Man page Source code |
| print.qploidy_area_ploidy_estimation | Man page Source code |
| print.qploidy_standardization | Man page Source code |
| qploidy_read_vcf | Man page Source code |
| read_axiom | Man page Source code |
| read_illumina_array | Man page Source code |
| read_qploidy_standardization | Man page Source code |
| rm_outlier | Man page Source code |
| simulate_axiom_summary | Man page Source code |
| simulate_illumina_file | Man page Source code |
| simulate_standardization_input | Man page Source code |
| simulate_vcf | Man page Source code |
| standardize | Man page Source code |
| summary_to_fitpoly | Man page Source code |
| updog_centers | Man page Source code |
| vcf_sanity_check | Man page Source code |
| write_qploidy_standardization | Man page Source code |
| xi_fun | Source code |
