Files in Qploidy
Estimation of Ploidy and Detection of Aneuploidy Using Genotyping Data
MD5
NEWS.md
NAMESPACE
DESCRIPTION
R/simulate_inputs.R
R/prepare.R
R/plots_standardization.R
R/vcf_sanity_check.R
R/standardization.R
R/ploidy_est.R
R/zzz.R
R/utils.R
inst/vcf_example_simulated.vcf.gz
inst/CITATION
inst/WORDLIST
inst/AxiomGT1_summary.txt
inst/logo.svg
inst/doc/Qploidy.R
inst/doc/Qploidy.Rmd
inst/doc/Qploidy.html
inst/app/www/cornell_seal_simple_web_b31b1b.png
inst/app/www/BreedingInsight_Primary_RGBColor_400px.png
inst/app/www/usda-logo-color.png
inst/app/www/BreedingInsight.png
inst/app/www/favicon.ico
inst/app/www/Qploidy_logo.png
inst/app/www/BIG_R_logo.png
inst/app/www/IFAS.jpg
inst/app/www/BreedingInsight_Secondary_RGBColor_400px.png
inst/help_files/Qploidy_cite.Rmd
inst/help_files/Qploidy_res.Rmd
inst/help_files/Qploidy_par.Rmd
build/vignette.rds
build/partial.rdb
tests/testthat.R
tests/testthat/test-standardization.R
tests/testthat/test-prepare.R
tests/testthat/test-ploidy_est.R
vignettes/Qploidy.Rmd
vignettes/fig6.jpg
vignettes/fig4.jpg
vignettes/fig7.jpg
vignettes/fig5.jpg
vignettes/fig2.jpg
vignettes/fig3.jpg
vignettes/fig1.jpg
man/simulate_standardization_input.Rd
man/get_zscore.Rd
man/pascalTriangle.Rd
man/print.qploidy_area_ploidy_estimation.Rd
man/print.qploidy_standardization.Rd
man/merge_arms_format.Rd
man/summary_to_fitpoly.Rd
man/qploidy_read_vcf.Rd
man/rm_outlier.Rd
man/read_illumina_array.Rd
man/mode.Rd
man/simulate_vcf.Rd
man/plot_baf_with_ploidy_guides.Rd
man/read_axiom.Rd
man/simulate_illumina_file.Rd
man/get_baf.Rd
man/get_R_theta.Rd
man/plot_baf_hist.Rd
man/all_resolutions_plots.Rd
man/write_qploidy_standardization.Rd
man/plot_qploidy_standardization.Rd
man/plot_baf.Rd
man/plot_xy_with_ploidy_guides.Rd
man/get_aneuploids.Rd
man/get_baf_par.Rd
man/simulate_axiom_summary.Rd
man/standardize.Rd
man/read_qploidy_standardization.Rd
man/get_centers.Rd
man/find_header_line.Rd
man/is_compressed_file.Rd
man/updog_centers.Rd
man/clean_summary.Rd
man/area_estimate_ploidy.Rd
man/vcf_sanity_check.Rd
