R.utils: Various Programming Utilities

Utility functions useful when programming and developing R packages.

AuthorHenrik Bengtsson [aut, cre, cph]
Date of publication2016-11-07 21:07:28
MaintainerHenrik Bengtsson <henrikb@braju.com>
LicenseLGPL (>= 2.1)
Version2.5.0
https://github.com/HenrikBengtsson/R.utils

View on CRAN

Man pages

addFinalizerToLast: Modifies .Last() to call 'finalizeSession()

Arguments: Static class to validate and process arguments

arrayIndex: Converts vector indices to array indices

asByte.Java: Converts a numeric to a Java byte

as.character.binmode: Converts a binary/octal/hexadecimal number into a string

as.character.GString: Gets the processed character string

as.character.Options: Returns a character string version of this object

as.character.ProgressBar: Gets a string description of the progress bar

as.character.Verbose: Returns a character string version of this object

as.double.Verbose: Gets a numeric value of this object

asInt.Java: Converts an numeric to a Java integer

as.list.MultiVerbose: Gets a list of Verbose objects

as.list.Options: Gets a list representation of the options

as.logical.Verbose: Gets a logical value of this object

asLong.Java: Converts a numeric to a Java long

Assert: The Assert class

asShort.Java: Converts a numeric to a Java short

attachLocally.list: Assigns an objects elements locally

callHooks: Call hook functions by hook name

callHooks.function: Call hook functions

capitalize: Capitalizes/decapitalizes each character string in a vector

captureOutput: Evaluate an R expression and captures the output

capture.Verbose: Captures output of a function

cat.Verbose: Concatenates and prints objects if above threshold

check.Assert: Static method asserting that a generic condition is true

cleanup.FileProgressBar: Removes the progress file for a file progress bar

cmdArgs: Simple access to parsed command-line arguments

cmdArgsCall: Calls an R function passing command-line arguments

colClasses: Creates a vector of column classes used for tabular reading

commandArgs: Extract command-line arguments

compile.SmartComments: Preprocess a vector of code lines

compressFile: Compressing and decompressing files

compressPDF: Compresses a PDF (into a new PDF)

convertComment.SmartComments: Converts a single smart comment to R code

convertComment.VComments: Converts a verbose comment to R code

copyDirectory: Copies a directory

copyFile: Copies a file atomically

countLines: Counts the number of lines in a text file

createFileAtomically: Creates a file atomically

createLink: Creates a link to a file or a directory

createWindowsShortcut: Creates a Microsoft Windows Shortcut (.lnk file)

currentTimeMillis.System: Get the current time in milliseconds

dataFrame: Allocates a data frame with given column classes

detachPackage: Detaches packages by name

dimNALT_-: Sets the dimension of an object with the option to infer one...

displayCode: Displays the contents of a text file with line numbers and...

doCall: Executes a function call with option to ignore unused...

downloadFile.character: Downloads a file

draw.density: Draws a density curve

eget: Gets a variable by name

egsub: Global substitute of expression using regular expressions

enter.Verbose: Writes a message and indents the following output

env: Creates a new environment, evaluates an expression therein,...

equals.Options: Checks if this object is equal to another Options object

equals.Verbose: Checks if this object is equal to another

evaluate.GString: Parses and evaluates a GString

evaluate.Verbose: Evaluates a function and prints its results if above...

exit.Verbose: Writes a message and unindents the following output

extract.array: Extract a subset of an array, matrix or a vector with unknown...

fileAccess: Checks the permission of a file or a directory

file.info2: Extract File Information (acknowledging symbolic file links...

filePath: Construct the path to a file from components and expands...

FileProgressBar: A progress bar that sets the size of a file accordingly

finalizeSession: Function to call for finalizing the R session

findFiles: Finds one or several files in multiple directories

findGhostscript.System: Searches for a Ghostview executable on the current system

findGraphicsDevice.System: Searches for a working PNG device

findSettings.Settings: Searches for the settings file in one or several directories

findSourceTraceback: Finds all 'srcfile' objects generated by source() in all call...

flush.TextStatusBar: Flushes the output

gcat: Parses, evaluates and outputs a GString

gcDLLs: Identifies and removes DLLs of packages already unloaded

getAbsolutePath: Gets the absolute pathname string

getBarString.ProgressBar: Gets the progress bar string to be displayed

getBuiltinDate.GString: Gets the current date

getBuiltinDatetime.GString: Gets the current date and time

getBuiltinHostname.GString: Gets the hostname of the system running R

getBuiltinOs.GString: Gets the operating system of the running machine

getBuiltinPid.GString: Gets the process id of the current R session

getBuiltinRhome.GString: Gets the path where R is installed

getBuiltinRversion.GString: Gets the current R version

getBuiltinTime.GString: Gets the current time

getBuiltinUsername.GString: Gets the username of the user running R

getCharacters.Arguments: Coerces to a character vector and validates

getDoubles.Arguments: Coerces to a double vector and validates

getEnvironment.Arguments: Gets an existing environment

getFilename.Arguments: Gets and validates a filename

getHostname.System: Retrieves the computer name of the current host

getIndices.Arguments: Coerces to a integer vector and validates

getInstanceOf.Arguments: Gets an instance of the object that is of a particular class

getIntegers.Arguments: Coerces to a integer vector and validates

getLabel.TextStatusBar: Gets the current value of a label

getLeaves.Options: Gets all (non-list) options in a flat list

getLoadedPathname.Settings: Gets the pathname of the settings file loaded

getLogicals.Arguments: Coerces to a logical vector and validates

getMessage.TimeoutException: Gets the message of the exception

getNumerics.Arguments: Coerces to a numeric vector and validates

getOption.Options: Gets an option

getParent: Gets the string of the parent specified by this pathname

getRaw.GString: Gets the unprocessed GString

getReadablePathname.Arguments: Gets a readable pathname

getReadablePathnames.Arguments: Gets a readable pathname

getRegularExpression.Arguments: Gets a valid regular expression pattern

getRelativePath: Gets the relative pathname relative to a directory

getThreshold.Verbose: Gets current verbose threshold

getTimestampFormat.Verbose: Gets the default timestamp format

getUsername.System: Retrieves the name of the user running R

getVariableValue.GString: Gets a variable value given a name and attributes

getVector.Arguments: Validates a vector

getVerbose.Arguments: Coerces to Verbose object

getWritablePathname.Arguments: Gets a writable pathname

gstring: Parses and evaluates a GString into a regular string

GString-class: Character string with advanced substitutions

hasOption.Options: Checks if an option exists

hasUrlProtocol: Checks if one or several pathnames has a URL protocol

header.Verbose: Writes a header

hpaste: Concatenating vectors into human-readable strings

hsize: Convert byte sizes into human-readable byte sizes

inAnyInterval.numeric: Checks if a set of values are inside one or more intervals

increase.ProgressBar: Increases (steps) progress bar

inherits.Assert: Static method asserting that an object inherits from of a...

insert: Insert values to a vector at certain positions

installPackages: Install R packages by name or URL

intervalsToSeq.matrix: Generates a vector of indices from a matrix of intervals

intToBin: Converts an integer to a binary/octal/hexadecimal number

isAbsolutePath: Checks if this pathname is absolute

isDirectory: Checks if the file specification is a directory

isDone.ProgressBar: Checks if progress bar is completed

isEof.connection: Checks if the current file position for a connection is at...

isFile: Checks if the file specification is a file

isMatrix.Assert: Static method asserting thatan object is a matrix

isModified.Settings: Checks if settings has been modified compared to whats on...

isOn.NullVerbose: Checks if the output is on

isOn.Verbose: Checks if the output is on

isOpen.character: Checks if there is an open connection to a file

isPackageInstalled: Checks if a package is installed or not

isPackageLoaded: Checks if a package is loaded or not

isReplicated: Identifies all entries with replicated values

isScalar.Assert: Static method asserting thatan object is a single value

isSingle: Identifies all entries that exists exactly ones

isUrl: Checks if one or several pathnames is URLs

isVector.Assert: Static method asserting thatan object is a vector

isVisible.NullVerbose: Checks if a certain verbose level will be shown or not

isVisible.Verbose: Checks if a certain verbose level will be shown or not

isZero: Checks if a value is (close to) zero or not

Java: Static class for Java related methods

lastModified: Gets the time when the file was last modified

LComments: The LComments class

less.Verbose: Creates a cloned instance with a higher threshold

listDirectory: Gets the file names in the directory

loadAnywhere.Settings: Loads settings from file

loadObject: Method to load object from a file or a connection

loadToEnv: Method to load objects to a new environment

mapToIntervals.numeric: Maps values to intervals

mergeIntervals.numeric: Merges intervals

mkdirs: Creates a directory including any necessary but nonexistent...

more.Verbose: Creates a cloned instance with a lower threshold

mout: Miscellaneous functions for outputting via message()

moveInSearchPath: Moves a environment in the search path to another position

mpager: A \"pager\" function that outputs to standard error

MultiVerbose: A Verbose class ignoring everything

names.Options: Gets the full pathname of all (non-list) options

nbrOfOptions.Options: Gets the number of options set

newline.TextStatusBar: Writes a newline

newline.Verbose: Writes one or several empty lines

Non-documented_objects: Non-documented objects

nullfile: Gets the pathname of the NULL device on the current platform

NullVerbose: A Verbose class ignoring everything

off.Verbose: Turn off the output

onGarbageCollect: Registers a function to be called when the R garbage...

onSessionExit: Registers a function to be called when the R session finishes

on.Verbose: Turn on the output

openBrowser.System: Opens an HTML document using the OS default HTML browser

Options: The Options class

parseDebian.System: Parses a string, file or connection for Debian formatted...

parse.GString: Parses a GString

parse.SmartComments: Parses one single smart comment

patchCode: Patches installed and loaded packages and more

popBackupFile: Drops a backup suffix from the backup pathname

popMessage.TextStatusBar: Adds a message above the status bar

popTemporaryFile: Drops a temporary suffix from the temporary pathname

printf: C-style formatted output

printf.Verbose: Formats and prints object if above threshold

print.GString: Prints the processed GString

print.Verbose: Prints objects if above threshold

ProgressBar: Provides text based counting progress bar

promptAndSave.Settings: Prompt user to save modified settings

pushBackupFile: Appends a backup suffix to the pathname

pushState.Verbose: Pushes the current indentation state of the Verbose object

pushTemporaryFile: Appends a temporary suffix to the pathname

queryRCmdCheck: Gets the on R CMD check if the current R session was launched...

readBinFragments: Reads binary data from disjoint sections of a connection or a...

readByte.Java: Reads a Java formatted byte (8 bits) from a connection

readInt.Java: Reads a Java formatted int (32 bits) from a connection

readRdHelp: Reads one or more Rd help files in a certain format

readShort.Java: Reads a Java formatted short (16 bits) from a connection

readTable: Reads a file in table format

readTableIndex: Reads a single column from file in table format

readUTF.Java: Reads a Java (UTF-8) formatted string from a connection

readWindowsShellLink: Reads a Microsoft Windows Shortcut (.lnk file)

readWindowsShortcut: Reads a Microsoft Windows Shortcut (.lnk file)

reassignInPackage: Re-assigns a new value to an existing object in a loaded...

removeDirectory: Removes a directory

renameFile: Renames a file (or a directory) atomically/safely

resample: Sample values from a set of elements

reset.ProgressBar: Reset progress bar

reset.SmartComments: Resets a SmartComments compiler

reset.VComments: Resets a VComments compiler

resetWarnings: Resets recorded warnings

ruler.Verbose: Writes a ruler

R.utils-package: Package R.utils

saveAnywhere.Settings: Saves settings to file

saveObject: Saves an object to a file or a connection

seqToHumanReadable: Gets a short human readable string representation of an...

seqToIntervals: Gets all contigous intervals of a vector of indices

setDefaultLevel.Verbose: Sets the current default verbose level

setLabels.TextStatusBar: Sets new values of given labels

setLabel.TextStatusBar: Sets the value of a label

setMaxValue.ProgressBar: Sets maximum value

setOption: Sets a option in R

setOption.Options: Sets an option

setProgress.ProgressBar: Sets current progress

setStepLength.ProgressBar: Sets default step length

setThreshold.Verbose: Sets verbose threshold

setTicks.ProgressBar: Sets values for which ticks should be visible

setTimestampFormat.Verbose: Sets the default timestamp format

Settings: Class for applicational settings

setValue.ProgressBar: Sets current value

shell.exec2: Open a file or URL using Windows File Associations

SmartComments: Abstract class SmartComments

sourceDirectory: Sources files recursively to either local or global...

sourceTo: Parses and evaluates code from a file or a connection

splitByPattern: Splits a single character string by pattern

stext: Writes text in the margin along the sides of a plot

str.Options: Prints the structure of the options

str.Verbose: Prints the structure of an object if above threshold

subplots: Creates a grid of subplots

summary.Verbose: Generates a summary of an object if above threshold

swapXY.density: Swaps x and y coordinates of a density object

Sys.readlink2: Read File Symbolic Links (also on Windows)

System: Static class to query information about the system

systemR: Launches another R process from within R

tempvar: Gets a unique non-existing temporary variable name

TextStatusBar: A status bar at the R prompt that can be updated

TimeoutException: TimeoutException represents timeout errors

timestampOn.Verbose: Turns automatic timestamping on and off

timestamp.Verbose: Writes a timestamp

tmpfile: Creates a temporary file with content

toCamelCase: Converts a string of words into a merged camel-cased word

touchFile: Updates the timestamp of a file

toUrl: Converts a pathname into a URL

unwrap.array: Unwrap an array, matrix or a vector to an array of more...

update.FileProgressBar: Updates file progress bar

updateLabels.TextStatusBar: Sets the new values of given labels and updates the status...

update.ProgressBar: Updates progress bar

update.TextStatusBar: Updates the status bar (visually)

use: Attaches or loads packages

useRepos: Sets package repositories

validate.SmartComments: Validates the compiled lines

validate.VComments: Validates the compiled lines

VComments: The VComments class

Verbose: Class to writing verbose messages to a connection or file

warnings.Verbose: Outputs any warnings recorded

whichVector.logical: Identifies TRUE elements in a logical vector

withCapture: Evaluates an expression and captures the code and/or the...

withLocale: Evaluate an R expression with locale set temporarily

withOptions: Evaluate an R expression with options set temporarily

withRepos: Evaluate an R expression with repositories set temporarily

withSeed: Evaluate an R expression with a temporarily set random set

withSink: Evaluate an R expression while temporarily diverting output

withTimeout: Evaluate an R expression and interrupts it if it takes too...

wrap.array: Reshape an array or a matrix by permuting and/or joining...

writeBinFragments: Writes binary data to disjoint sections of a connection or a...

writeByte.Java: Writes a byte (8 bits) to a connection in Java format

writeDataFrame.data.frame: Writes a data.frame to tabular text file

writeInt.Java: Writes a integer (32 bits) to a connection in Java format

writeRaw.MultiVerbose: Writes to each of the Verbose objects

writeRaw.NullVerbose: All output methods

writeRaw.Verbose: Writes objects if above threshold

writeShort.Java: Writes a short (16 bits) to a connection in Java format

writeUTF.Java: Writes a string to a connection in Java format (UTF-8)

Files in this package

R.utils
R.utils/inst
R.utils/inst/data-ex
R.utils/inst/data-ex/NEWS.LNK
R.utils/inst/data-ex/exampleVComments.R
R.utils/inst/data-ex/HISTORY.LNK
R.utils/inst/data-ex/lnkFileWith10BitsInFlag.lnk
R.utils/tests
R.utils/tests/compressPDF.R
R.utils/tests/gcDLLs.R
R.utils/tests/withOptions.R
R.utils/tests/fileAccess.R
R.utils/tests/attachLocally.R
R.utils/tests/seqToIntervals.R
R.utils/tests/Verbose.R
R.utils/tests/findSourceTraceback.R
R.utils/tests/commandArgs.R
R.utils/tests/withLocale.R
R.utils/tests/hpaste.R
R.utils/tests/withCapture.R
R.utils/tests/filePath.R
R.utils/tests/countLines.R
R.utils/tests/withRepos.R
R.utils/tests/loadToEnv.R
R.utils/tests/parseRepos.R
R.utils/tests/symlinks,files.R
R.utils/tests/zzz_finalizer_crash.R
R.utils/tests/writeDataFrame.R
R.utils/tests/TextStatusBar.R
R.utils/tests/compressFile.R
R.utils/tests/env.R
R.utils/tests/VComments.R
R.utils/tests/resample.R
R.utils/tests/cout.R
R.utils/tests/Java.R
R.utils/tests/whichVector.R
R.utils/tests/subplots.R
R.utils/tests/extract.array.R
R.utils/tests/readBinFragments.R
R.utils/tests/isZero.R
R.utils/tests/dimNA.R
R.utils/tests/Options.R
R.utils/tests/copyRenameFile.R
R.utils/tests/cmdArgs.R
R.utils/tests/wrap.array.R
R.utils/tests/insert.R
R.utils/tests/captureOutput.R
R.utils/tests/touchFile.R
R.utils/tests/GString.R
R.utils/tests/intToHex.R
R.utils/tests/Settings.R
R.utils/tests/MultiVerbose.R
R.utils/tests/pushBackupFile.R
R.utils/tests/isUrl.R
R.utils/tests/getOption.R
R.utils/tests/FileProgressBar.R
R.utils/tests/withTimeout.R
R.utils/tests/queryRCmdCheck.R
R.utils/tests/loadObject.R
R.utils/tests/absolute-relative-paths.R
R.utils/tests/toCamelCase.R
R.utils/tests/useRepos.R
R.utils/tests/getParent.R
R.utils/tests/egsub.R
R.utils/tests/eget.R
R.utils/tests/ProgressBar.R
R.utils/tests/withSink.R
R.utils/tests/seqToHumanReadable.R
R.utils/tests/findFiles.R
R.utils/tests/use.R
R.utils/tests/withSeed.R
R.utils/tests/NullVerbose.R
R.utils/tests/mout.R
R.utils/tests/callHooks.R
R.utils/tests/System.R
R.utils/tests/sourceTo.R
R.utils/tests/readWindowsShellLink.R
R.utils/tests/tempvar.R
R.utils/tests/pushTemporaryFile.R
R.utils/tests/gcat.R
R.utils/tests/tmpfile.R
R.utils/tests/colClasses.R
R.utils/tests/systemR.R
R.utils/tests/listDirectory.R
R.utils/tests/mkdirs.R
R.utils/tests/isPackageLoaded.R
R.utils/tests/splitByPattern.R
R.utils/tests/displayCode.R
R.utils/tests/isReplicated.R
R.utils/tests/doCall.R
R.utils/tests/mpager.R
R.utils/tests/Arguments-FILES.R
R.utils/tests/dataFrame.R
R.utils/tests/createLink.R
R.utils/tests/capitalize.R
R.utils/tests/nullfile.R
R.utils/tests/readWindowsShortcut.R
R.utils/tests/symlinks,dirs.R
R.utils/tests/createFileAtomically.R
R.utils/tests/arrayIndex.R
R.utils/NAMESPACE
R.utils/NEWS
R.utils/R
R.utils/R/compressPDF.R R.utils/R/finalizeSession.R R.utils/R/gcDLLs.R R.utils/R/withOptions.R R.utils/R/fileAccess.R R.utils/R/attachLocally.R R.utils/R/seqToIntervals.R R.utils/R/Verbose.R R.utils/R/findSourceTraceback.R R.utils/R/hasUrlProtocol.R R.utils/R/isEof.connection.R R.utils/R/commandArgs.R R.utils/R/000.R R.utils/R/GenericSummary.R R.utils/R/withLocale.R R.utils/R/isOpen.character.R R.utils/R/reassignInPackage.R R.utils/R/hpaste.R R.utils/R/withCapture.R R.utils/R/printf.R R.utils/R/filePath.R R.utils/R/countLines.R R.utils/R/withRepos.R R.utils/R/readRdHelp.R R.utils/R/loadToEnv.R R.utils/R/hsize.R R.utils/R/renameFile.R R.utils/R/mergeByCommonTails.R R.utils/R/downloadFile.R R.utils/R/saveObject.R R.utils/R/writeDataFrame.R R.utils/R/TextStatusBar.R R.utils/R/resetWarnings.R R.utils/R/intervalsToSeq.R R.utils/R/readTable.R R.utils/R/popTemporaryFile.R R.utils/R/compressFile.R R.utils/R/popBackupFile.R R.utils/R/getPathIfEmpty.R R.utils/R/env.R R.utils/R/isFile.R R.utils/R/VComments.R R.utils/R/gstring.R R.utils/R/resample.R R.utils/R/mapToIntervals.R R.utils/R/Java.R R.utils/R/whichVector.R R.utils/R/subplots.R R.utils/R/isPackageInstalled.R R.utils/R/extract.array.R R.utils/R/readBinFragments.R R.utils/R/isZero.R R.utils/R/moveInSearchPath.R R.utils/R/dimNA.R R.utils/R/Options.R R.utils/R/mergeIntervals.R R.utils/R/getAbsolutePath.R R.utils/R/FileListTree.R R.utils/R/installPackages.R R.utils/R/onGarbageCollect.R R.utils/R/cmdArgs.R R.utils/R/wrap.array.R R.utils/R/insert.R R.utils/R/captureOutput.R R.utils/R/touchFile.R R.utils/R/parseArgs.R R.utils/R/intToHex.R R.utils/R/Settings.R R.utils/R/splitByCommonTails.R R.utils/R/MultiVerbose.R R.utils/R/pushBackupFile.R R.utils/R/lastModified.R R.utils/R/isUrl.R R.utils/R/writeBinFragments.R R.utils/R/getRelativePath.R R.utils/R/Assert.R R.utils/R/shell.exec2.R R.utils/R/FileProgressBar.R R.utils/R/withTimeout.R R.utils/R/CmdArgsFunction.R R.utils/R/toAsciiRegExprPattern.R R.utils/R/density.EXTS.R R.utils/R/queryRCmdCheck.R R.utils/R/loadObject.R R.utils/R/addFinalizerToLast.R R.utils/R/toCamelCase.R R.utils/R/useRepos.R R.utils/R/GString-class.R R.utils/R/getParent.R R.utils/R/egsub.R R.utils/R/inAnyInterval.R R.utils/R/eget.R R.utils/R/removeDirectory.R R.utils/R/copyDirectory.R R.utils/R/ProgressBar.R R.utils/R/withSink.R R.utils/R/seqToHumanReadable.R R.utils/R/readTableIndex.R R.utils/R/copyFile.R R.utils/R/findFiles.R R.utils/R/use.R R.utils/R/withSeed.R R.utils/R/NullVerbose.R R.utils/R/mout.R R.utils/R/callHooks.R R.utils/R/Sys.readlink2.R R.utils/R/onSessionExit.R R.utils/R/intToOct.R R.utils/R/006.fixVarArgs.R R.utils/R/System.R R.utils/R/isAbsolutePath.R R.utils/R/sourceTo.R R.utils/R/setOption.R R.utils/R/readWindowsShellLink.R R.utils/R/tempvar.R
R.utils/R/beta
R.utils/R/beta/Options.ui.Rtodo
R.utils/R/beta/singularPlural.Rtrial
R.utils/R/pushTemporaryFile.R R.utils/R/gcat.R R.utils/R/tmpfile.R R.utils/R/colClasses.R R.utils/R/sourceDirectory.R R.utils/R/unwrap.array.R R.utils/R/intToBin.R R.utils/R/getCommonPrefix.R R.utils/R/systemR.R
R.utils/R/devel
R.utils/R/devel/fileSizeToHumanReadable.R R.utils/R/devel/splitUrl.R R.utils/R/devel/doCall.R R.utils/R/LComments.R R.utils/R/toUrl.R R.utils/R/isSingle.R R.utils/R/listDirectory.R R.utils/R/Arguments.R R.utils/R/mkdirs.R R.utils/R/TimeoutException.R R.utils/R/stext.R R.utils/R/isPackageLoaded.R R.utils/R/splitByPattern.R R.utils/R/999.NonDocumentedObjects.R R.utils/R/999.package.R R.utils/R/displayCode.R R.utils/R/isReplicated.R R.utils/R/doCall.R R.utils/R/mpager.R R.utils/R/detachPlain.R R.utils/R/SmartComments.R R.utils/R/zzz.R R.utils/R/dataFrame.R R.utils/R/createLink.R R.utils/R/detachPackage.R R.utils/R/capitalize.R R.utils/R/nullfile.R R.utils/R/readWindowsShortcut.R R.utils/R/isDirectory.R R.utils/R/patchCode.R R.utils/R/createWindowsShortcut.R R.utils/R/createFileAtomically.R R.utils/R/arrayIndex.R
R.utils/MD5
R.utils/DESCRIPTION
R.utils/man
R.utils/man/getThreshold.Verbose.Rd R.utils/man/writeDataFrame.data.frame.Rd R.utils/man/listDirectory.Rd R.utils/man/lastModified.Rd R.utils/man/egsub.Rd R.utils/man/gstring.Rd R.utils/man/off.Verbose.Rd R.utils/man/newline.TextStatusBar.Rd R.utils/man/getInstanceOf.Arguments.Rd R.utils/man/reset.VComments.Rd R.utils/man/parse.SmartComments.Rd R.utils/man/Verbose.Rd R.utils/man/Java.Rd R.utils/man/attachLocally.list.Rd R.utils/man/MultiVerbose.Rd R.utils/man/compressPDF.Rd R.utils/man/getBuiltinUsername.GString.Rd R.utils/man/toUrl.Rd R.utils/man/setLabels.TextStatusBar.Rd R.utils/man/setThreshold.Verbose.Rd R.utils/man/inAnyInterval.numeric.Rd R.utils/man/getUsername.System.Rd R.utils/man/saveAnywhere.Settings.Rd R.utils/man/queryRCmdCheck.Rd R.utils/man/asByte.Java.Rd R.utils/man/whichVector.logical.Rd R.utils/man/isPackageLoaded.Rd R.utils/man/isFile.Rd R.utils/man/findGraphicsDevice.System.Rd R.utils/man/isEof.connection.Rd R.utils/man/evaluate.Verbose.Rd R.utils/man/ProgressBar.Rd R.utils/man/swapXY.density.Rd R.utils/man/file.info2.Rd R.utils/man/copyDirectory.Rd R.utils/man/loadToEnv.Rd R.utils/man/withOptions.Rd R.utils/man/getLeaves.Options.Rd R.utils/man/stext.Rd R.utils/man/env.Rd R.utils/man/withRepos.Rd R.utils/man/isOn.NullVerbose.Rd R.utils/man/writeShort.Java.Rd R.utils/man/equals.Verbose.Rd R.utils/man/detachPackage.Rd R.utils/man/mout.Rd R.utils/man/as.character.binmode.Rd R.utils/man/cmdArgsCall.Rd R.utils/man/displayCode.Rd R.utils/man/isModified.Settings.Rd R.utils/man/capitalize.Rd R.utils/man/onGarbageCollect.Rd R.utils/man/isVisible.Verbose.Rd R.utils/man/getEnvironment.Arguments.Rd R.utils/man/withTimeout.Rd R.utils/man/enter.Verbose.Rd R.utils/man/isScalar.Assert.Rd R.utils/man/fileAccess.Rd R.utils/man/getVariableValue.GString.Rd R.utils/man/setLabel.TextStatusBar.Rd R.utils/man/readWindowsShortcut.Rd R.utils/man/tempvar.Rd R.utils/man/arrayIndex.Rd R.utils/man/popMessage.TextStatusBar.Rd R.utils/man/isDone.ProgressBar.Rd R.utils/man/getLoadedPathname.Settings.Rd R.utils/man/readBinFragments.Rd R.utils/man/downloadFile.character.Rd R.utils/man/getIntegers.Arguments.Rd R.utils/man/getReadablePathnames.Arguments.Rd R.utils/man/isAbsolutePath.Rd R.utils/man/summary.Verbose.Rd R.utils/man/withLocale.Rd R.utils/man/readTableIndex.Rd R.utils/man/getLogicals.Arguments.Rd R.utils/man/findGhostscript.System.Rd R.utils/man/currentTimeMillis.System.Rd R.utils/man/reset.SmartComments.Rd R.utils/man/as.logical.Verbose.Rd R.utils/man/isVisible.NullVerbose.Rd R.utils/man/nullfile.Rd R.utils/man/createFileAtomically.Rd R.utils/man/getFilename.Arguments.Rd R.utils/man/getRelativePath.Rd R.utils/man/getBuiltinRversion.GString.Rd R.utils/man/splitByPattern.Rd R.utils/man/convertComment.VComments.Rd R.utils/man/setTimestampFormat.Verbose.Rd R.utils/man/filePath.Rd R.utils/man/str.Options.Rd R.utils/man/writeByte.Java.Rd R.utils/man/intervalsToSeq.matrix.Rd R.utils/man/getBarString.ProgressBar.Rd R.utils/man/isOpen.character.Rd R.utils/man/mpager.Rd R.utils/man/compressFile.Rd R.utils/man/setStepLength.ProgressBar.Rd R.utils/man/pushBackupFile.Rd R.utils/man/getBuiltinRhome.GString.Rd R.utils/man/setOption.Options.Rd R.utils/man/parseDebian.System.Rd R.utils/man/withSink.Rd R.utils/man/countLines.Rd R.utils/man/shell.exec2.Rd R.utils/man/findFiles.Rd R.utils/man/hasOption.Options.Rd R.utils/man/setTicks.ProgressBar.Rd R.utils/man/flush.TextStatusBar.Rd R.utils/man/readShort.Java.Rd R.utils/man/as.character.GString.Rd R.utils/man/colClasses.Rd R.utils/man/getTimestampFormat.Verbose.Rd R.utils/man/isMatrix.Assert.Rd R.utils/man/reset.ProgressBar.Rd R.utils/man/getWritablePathname.Arguments.Rd R.utils/man/copyFile.Rd R.utils/man/findSourceTraceback.Rd R.utils/man/mapToIntervals.numeric.Rd R.utils/man/isVector.Assert.Rd R.utils/man/update.TextStatusBar.Rd R.utils/man/createLink.Rd R.utils/man/reassignInPackage.Rd R.utils/man/asInt.Java.Rd R.utils/man/isDirectory.Rd R.utils/man/draw.density.Rd R.utils/man/withCapture.Rd R.utils/man/setMaxValue.ProgressBar.Rd R.utils/man/cat.Verbose.Rd R.utils/man/onSessionExit.Rd R.utils/man/VComments.Rd R.utils/man/validate.VComments.Rd R.utils/man/getRegularExpression.Arguments.Rd R.utils/man/finalizeSession.Rd R.utils/man/timestampOn.Verbose.Rd R.utils/man/pushState.Verbose.Rd R.utils/man/update.ProgressBar.Rd R.utils/man/warnings.Verbose.Rd R.utils/man/increase.ProgressBar.Rd R.utils/man/setDefaultLevel.Verbose.Rd R.utils/man/commandArgs.Rd R.utils/man/callHooks.function.Rd R.utils/man/as.double.Verbose.Rd R.utils/man/compile.SmartComments.Rd R.utils/man/System.Rd R.utils/man/validate.SmartComments.Rd R.utils/man/readTable.Rd R.utils/man/use.Rd R.utils/man/eget.Rd R.utils/man/more.Verbose.Rd R.utils/man/callHooks.Rd R.utils/man/resample.Rd R.utils/man/evaluate.GString.Rd R.utils/man/ruler.Verbose.Rd R.utils/man/check.Assert.Rd R.utils/man/hsize.Rd R.utils/man/readWindowsShellLink.Rd R.utils/man/doCall.Rd R.utils/man/promptAndSave.Settings.Rd R.utils/man/convertComment.SmartComments.Rd R.utils/man/moveInSearchPath.Rd R.utils/man/writeRaw.Verbose.Rd R.utils/man/readByte.Java.Rd R.utils/man/resetWarnings.Rd R.utils/man/wrap.array.Rd R.utils/man/TextStatusBar.Rd R.utils/man/getBuiltinPid.GString.Rd R.utils/man/addFinalizerToLast.Rd R.utils/man/setValue.ProgressBar.Rd R.utils/man/getReadablePathname.Arguments.Rd R.utils/man/createWindowsShortcut.Rd R.utils/man/LComments.Rd R.utils/man/isPackageInstalled.Rd R.utils/man/getLabel.TextStatusBar.Rd R.utils/man/str.Verbose.Rd R.utils/man/getNumerics.Arguments.Rd R.utils/man/isSingle.Rd R.utils/man/as.character.ProgressBar.Rd R.utils/man/insert.Rd R.utils/man/writeRaw.NullVerbose.Rd R.utils/man/mergeIntervals.numeric.Rd R.utils/man/print.Verbose.Rd R.utils/man/readUTF.Java.Rd R.utils/man/Arguments.Rd R.utils/man/getVector.Arguments.Rd R.utils/man/header.Verbose.Rd R.utils/man/isOn.Verbose.Rd R.utils/man/GString-class.Rd R.utils/man/captureOutput.Rd R.utils/man/getRaw.GString.Rd R.utils/man/as.list.MultiVerbose.Rd R.utils/man/asLong.Java.Rd R.utils/man/less.Verbose.Rd R.utils/man/tmpfile.Rd R.utils/man/pushTemporaryFile.Rd R.utils/man/Settings.Rd R.utils/man/isUrl.Rd R.utils/man/Assert.Rd R.utils/man/writeInt.Java.Rd R.utils/man/unwrap.array.Rd R.utils/man/intToBin.Rd R.utils/man/saveObject.Rd R.utils/man/getVerbose.Arguments.Rd R.utils/man/print.GString.Rd R.utils/man/nbrOfOptions.Options.Rd R.utils/man/names.Options.Rd R.utils/man/getHostname.System.Rd R.utils/man/popBackupFile.Rd R.utils/man/Options.Rd R.utils/man/hasUrlProtocol.Rd R.utils/man/gcDLLs.Rd R.utils/man/timestamp.Verbose.Rd R.utils/man/parse.GString.Rd R.utils/man/getCharacters.Arguments.Rd R.utils/man/as.list.Options.Rd R.utils/man/writeBinFragments.Rd R.utils/man/openBrowser.System.Rd R.utils/man/dataFrame.Rd R.utils/man/extract.array.Rd R.utils/man/subplots.Rd R.utils/man/cleanup.FileProgressBar.Rd R.utils/man/asShort.Java.Rd R.utils/man/touchFile.Rd R.utils/man/NullVerbose.Rd R.utils/man/popTemporaryFile.Rd R.utils/man/patchCode.Rd R.utils/man/withSeed.Rd R.utils/man/loadObject.Rd R.utils/man/getBuiltinOs.GString.Rd R.utils/man/installPackages.Rd R.utils/man/as.character.Verbose.Rd R.utils/man/removeDirectory.Rd R.utils/man/seqToIntervals.Rd R.utils/man/updateLabels.TextStatusBar.Rd R.utils/man/TimeoutException.Rd R.utils/man/useRepos.Rd R.utils/man/gcat.Rd R.utils/man/isZero.Rd R.utils/man/R.utils-package.Rd R.utils/man/Sys.readlink2.Rd R.utils/man/readInt.Java.Rd R.utils/man/update.FileProgressBar.Rd R.utils/man/sourceTo.Rd R.utils/man/seqToHumanReadable.Rd R.utils/man/readRdHelp.Rd R.utils/man/newline.Verbose.Rd R.utils/man/setOption.Rd R.utils/man/cmdArgs.Rd R.utils/man/as.character.Options.Rd R.utils/man/hpaste.Rd R.utils/man/getMessage.TimeoutException.Rd R.utils/man/getOption.Options.Rd R.utils/man/sourceDirectory.Rd R.utils/man/loadAnywhere.Settings.Rd R.utils/man/getBuiltinDate.GString.Rd R.utils/man/isReplicated.Rd R.utils/man/mkdirs.Rd R.utils/man/renameFile.Rd R.utils/man/findSettings.Settings.Rd R.utils/man/setProgress.ProgressBar.Rd R.utils/man/writeRaw.MultiVerbose.Rd R.utils/man/systemR.Rd R.utils/man/dimNALT_-.Rd R.utils/man/printf.Verbose.Rd R.utils/man/toCamelCase.Rd R.utils/man/getBuiltinDatetime.GString.Rd R.utils/man/writeUTF.Java.Rd R.utils/man/FileProgressBar.Rd R.utils/man/equals.Options.Rd R.utils/man/printf.Rd R.utils/man/SmartComments.Rd R.utils/man/inherits.Assert.Rd R.utils/man/exit.Verbose.Rd R.utils/man/capture.Verbose.Rd R.utils/man/getParent.Rd R.utils/man/getDoubles.Arguments.Rd R.utils/man/on.Verbose.Rd R.utils/man/getIndices.Arguments.Rd R.utils/man/getAbsolutePath.Rd R.utils/man/Non-documented_objects.Rd R.utils/man/getBuiltinTime.GString.Rd R.utils/man/getBuiltinHostname.GString.Rd

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