R2admb: 'ADMB' to R Interface Functions

A series of functions to call 'AD Model Builder' (i.e., compile and run models) from within R, read the results back into R as 'admb' objects, and provide standard accessors (i.e. coef(), vcov(), etc.)

Install the latest version of this package by entering the following in R:
install.packages("R2admb")
AuthorBen Bolker, Hans Skaug, Jeff Laake
Date of publication2016-12-07 08:43:35
MaintainerBen Bolker <bolker@mcmaster.ca>
LicenseGPL
Version0.7.15

View on CRAN

Files

inst
inst/admbtests
inst/admbtests/reedfrog.R inst/admbtests/fileswitch.R inst/admbtests/simple.R inst/admbtests/toy1.R
inst/admbtests/ReedfrogSizepred0.tpl
inst/admbtests/racecond.RData
inst/admbtests/longvars.R
inst/admbtests/README
inst/admbtests/toy1.tpl
inst/admbtests/deltavar_prof.tpl
inst/admbtests/longvars.tpl
inst/NEWS.Rd
inst/tplfiles
inst/tplfiles/glmmadmb.tpl
inst/tplfiles/ReedfrogSizepred0.tpl
inst/tplfiles/toy1.tpl
inst/tplfiles/testversion.tpl
inst/doc
inst/doc/R2admb.pdf
inst/doc/R2admb.Rnw
inst/doc/R2admb.R
inst/doc/Reedfrog_runs.RData
inst/doc/toy1_runs.RData
tests
tests/stderr_bug.R tests/do_admb.R tests/skate.R tests/amak.R tests/racecond.R
tests/inputs
tests/inputs/readtest1.bar
tests/inputs/n2mvol.tpl
tests/inputs/ham5.tpl
tests/inputs/pheno.tpl
tests/inputs/lidar.tpl
tests/inputs/skate.cor
tests/inputs/kidney.tpl
tests/inputs/socatt.tpl
tests/inputs/skate.par
tests/inputs/biglog.tpl
tests/inputs/rat.tpl
tests/inputs/chem-eng.tpl
tests/inputs/glmmadmb.tpl
tests/inputs/forest.tpl
tests/inputs/binomial_w2.tpl
tests/inputs/diet.tpl
tests/inputs/caest.tpl
tests/inputs/truncreg.tpl
tests/inputs/orange2.tpl
tests/inputs/pella-t.tpl
tests/inputs/ham4.tpl
tests/inputs/readtest1.dat
tests/inputs/vonbr.tpl
tests/inputs/spatial.tpl
tests/inputs/skate.rep
tests/inputs/readtest1.tpl
tests/inputs/nbmm.tpl
tests/inputs/skate.std
tests/inputs/liver_gamma.tpl
tests/inputs/vonb.tpl
tests/inputs/skate.tpl
tests/inputs/sdv.tpl
tests/inputs/polio.tpl
tests/inputs/logistic.tpl
tests/inputs/readtest1.std
tests/inputs/orange_cor.tpl
tests/inputs/bcb.tpl
tests/inputs/catage.tpl
tests/inputs/bvprobit.tpl
tests/inputs/simple.tpl
tests/inputs/union.tpl
tests/inputs/finance.tpl
tests/inputs/amak.tpl
tests/inputs/binomial.tpl
tests/inputs/orange.tpl
tests/inputs/diet_sk.tpl
tests/inputs/nested4.tpl
tests/inputs/ratre.tpl
tests/inputs/readtest1.par
tests/inputs/readtest1.cor
tests/is_int.R tests/allinputs.R
NAMESPACE
R
R/extract_gradient.r R/do_admb.r R/write-funs.r R/check_section.R R/R2admb-package.R R/mcmc.control.r R/plot.admb_hist.r R/read-funs.r R/get_version.r R/readfit.R R/utility-funs.R R/std_accessor.r R/find_large_cor.r R/run.control.r R/setup_admb.R R/base-funs.r
vignettes
vignettes/TODO
vignettes/R2admb.Rnw
vignettes/R2admb.bib
vignettes/Reedfrog_runs.RData
vignettes/ReedfrogSizepred0.tpl
vignettes/ReedfrogSizepred0_gen.tpl
vignettes/ESA1009.bst
vignettes/TODO_2
vignettes/ReedfrogSizepred.tpl
vignettes/toy1.tpl
vignettes/Reedfrog_runs.R
vignettes/ReedfrogSizepred1.tpl
vignettes/auto
vignettes/auto/R2admb.el
vignettes/Gopher.tpl
MD5
build
build/vignette.rds
DESCRIPTION
man
man/admb_version.Rd man/R2admb-package.Rd man/read_plt.Rd man/mcmc.control.Rd man/find_large_cor.Rd man/plot.admb_hist.Rd man/run.control.Rd man/AIC.admb.Rd man/write_pin.Rd man/read_pars.Rd man/compile_admb.Rd man/do_admb.Rd man/extract_gradient.Rd man/setup_admb.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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