run.control: set run options for running ADMB via R

In R2admb: 'ADMB' to R Interface Functions

set run options for running ADMB via R

Description

A helper function

Usage

run.control(check_tpl = TRUE, write_files = TRUE, checkparam = c("stop",
  "warn", "write", "ignore"), checkdata = c("stop", "warn", "write",
  "ignore"), compile = TRUE, run = TRUE, read_files = TRUE,
  clean_files = "all")

Arguments

check_tpl	Check the specified TPL file for problems?
write_files	Write out data and initialization files?
checkparam	How to check PARAMETERS section of the TPL file: stop=stop if there are problems; warn=give a warning if there are problems, but try to proceed; write=modify TPL file, writing appropriate sections; ignore=assume TPL file is OK, proceed
checkdata	as with checkparam: how/whether to check/generate the DATA section of the TPL file
compile	compile the TPL file (via ADMB) into an executable?
run	run the executable file with the specified data/initial values?
read_files	read the results of an ADMB run into R?
clean_files	Delete working files after completion of the run? Options are "all", "sys", "output", "none"; TRUE is equivalent to "all" and FALSE is equivalent to "none"

Value

A list with appropriate default values inserted for passing to do_admb

Author(s)

Ben Bolker

R2admb documentation built on Nov. 10, 2022, 5:59 p.m.