RADanalysis: Normalization and Study of Rank Abundance Distributions
Version 0.5.5

It has tools for normalization of rank abundance distributions (RAD) to a desired number of ranks using MaxRank Normalization method. RADs are commonly used in biology/ecology and mathematically equivalent to complementary cumulative distributions (CCDFs) which are used in physics, linguistics and sociology and more generally in data science.

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AuthorMohmmadkarim Saeedghalati [aut, cre], Farnoush Farahpour [aut], Daniel Hoffmann [aut]
Date of publication2016-03-15 15:10:40
MaintainerMohmmadkarim Saeedghalati <m.saeedghalati@uni-due.de>
LicenseGPL-3
Version0.5.5
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("RADanalysis")

Man pages

gut_nrads: Result of normalization of gut_otu_table with 'max_rank =...
gut_otu_table: Abundance table of gut microbiome.
RADanalysis: RADanalysis: A package for normalization of abundance tables...
RADnormalization: Normalizes an abundance vector to the desired number of...
RADnormalization_matrix: Normalizes an abundance table to the desired number of ranks
representative_point: Computes representative point based on the coordinates of...
representative_RAD: Computes representative normalized RAD of a group of...

Functions

RADanalysis Man page
RADanalysis-package Man page
RADnormalization Man page Source code
RADnormalization_matrix Man page Source code
gut_nrads Man page
gut_otu_table Man page
representative_RAD Man page Source code
representative_point Man page Source code

Files

inst
inst/doc
inst/doc/RADanalysis_intro.R
inst/doc/RADanalysis_intro.html
inst/doc/RADanalysis_intro.Rmd
NAMESPACE
data
data/gut_otu_table.rda
data/gut_nrads.rda
R
R/RADanalysis.R
R/representative.R
R/normalization.R
R/data.R
vignettes
vignettes/RADanalysis_intro.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
man
man/RADnormalization_matrix.Rd
man/gut_otu_table.Rd
man/RADanalysis.Rd
man/gut_nrads.Rd
man/representative_point.Rd
man/representative_RAD.Rd
man/RADnormalization.Rd
RADanalysis documentation built on May 19, 2017, 6:07 p.m.