gut_otu_table: Abundance table of gut microbiome.

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Dethlefsen et al. 2008 ( have treated healthy individuals with the antibiotic Ciprofloxacin and monitored the states of the gut microbiome before the treatment, during the treatment, and some time after the treatment.




A matrix with 18 rows and 5670 columns.


Abundance table of 18 gut samples from 3 individuals, prior, under and after using Ciprofloxacin (Cp) antibiotic. Each row is the abundance of gut microbiome for one sample. The row names are as follows:

points 1 and 2 are considered pre-Cp, points 3 are considered under-Cp and point 4 and 5 are considered post-Cp.


Dethlefsen, Les, et al. "The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing." PLoS biol 6.11 (2008): e280.

RADanalysis documentation built on May 2, 2019, 6:13 a.m.