gut_nrads: Result of normalization of gut_otu_table with 'max_rank =...
| gut_nrads | R Documentation |
Result of normalization of gut_otu_table with max_rank = 400 and average_over = 2000.
Description
Normalized rads created from gut_otu_table with max_rank = 400 and average_over = 2000.
gut_otu_table has 18 gut samples from 3 individuals, prior, under and after using Ciprofloxacin (Cp)
antibiotic. Each row is the abundance of gut microbiome for one sample. The row names are as follows:
Usage
data(gut_nrads)
Format
Contain the result of RADnormalization_matrix(input = gut_otu_table,max_rank = 400,average_over = 2000)
Details
A1, B1 and C1 are samples from individuals A, B and C 60 days prior using Cp.
A2a is the sample from individual A 6 days prior using Cp.
A2b is the sample from individual A 2 days prior using Cp.
A2c, B2 and C2 are samples from individuals A, B and C one day prior using Cp.
A3a is the sample from individual A 3 days after the first day of Cp administration.
A3b, B3 and C3 are the samples from individual A, B and C 5 days after the first day of Cp administration.
A4, B4 and C4 are the samples from individual A, B and C 33 days after the first day of Cp administration.
A5, B5 and C5 are the samples from individual A, B and C 180 days after the first day of Cp administration.
points 1 and 2 are considered pre-Cp, points 3 are considered under-Cp and point 4 and 5 are considered post-Cp.
order of rows are similar to gut_otu_table
