Description Usage Format Details

Normalized rads created from `gut_otu_table`

with `max_rank = 400`

and `average_over = 2000`

.
`gut_otu_table`

has 18 gut samples from 3 individuals, prior, under and after using Ciprofloxacin (Cp)
antibiotic. Each row is the abundance of gut microbiome for one sample. The row names are as follows:

1 |

Contain the result of `RADnormalization_matrix(input = gut_otu_table,max_rank = 400,average_over = 2000)`

A1, B1 and C1 are samples from individuals A, B and C 60 days prior using Cp.

A2a is the sample from individual A 6 days prior using Cp.

A2b is the sample from individual A 2 days prior using Cp.

A2c, B2 and C2 are samples from individuals A, B and C one day prior using Cp.

A3a is the sample from individual A 3 days after the first day of Cp administration.

A3b, B3 and C3 are the samples from individual A, B and C 5 days after the first day of Cp administration.

A4, B4 and C4 are the samples from individual A, B and C 33 days after the first day of Cp administration.

A5, B5 and C5 are the samples from individual A, B and C 180 days after the first day of Cp administration.

points 1 and 2 are considered pre-Cp, points 3 are considered under-Cp and point 4 and 5 are considered post-Cp.

order of rows are similar to gut_otu_table

RADanalysis documentation built on May 29, 2017, 7:24 p.m.

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