Description Usage Arguments Details Value Examples

Mixed utility functions to compute accuracy, norms, labels from scores and to perform stratified cross-validation.

1 2 3 4 5 6 7 8 | ```
compute.acc(pred, labels)
compute.F(pred, labels)
norm1(x)
Unit.sphere.norm(K)
do.stratified.cv.data(examples, positives, k = 5, seed = NULL)
labelsfromscores(scores, thresh)
Multiple.labels.from.scores(S, thresh.vect)
selection.test(pos.scores, av.scores, ind.positives, alpha = 0.05, thresh.pos = 0)
``` |

`pred` |
vector of the predicted labels |

`labels` |
vector of the true labels. Note that 0 stands for negative and 1 for positive. In general the first level is negative and the second positive |

`x` |
numeric vector |

`K` |
a kernel matrix |

`examples` |
indices of the examples (a vector of integer) |

`positives` |
vector of integer. Indices of the positive examples. The indices refer to the indices of examples |

`k` |
number of folds (def = 5) |

`seed` |
seed of the random generator (def=NULL). If is set to NULL no initiazitation is performed |

`scores` |
numeric. Vector of scores: each element correspond to the score of an example |

`thresh` |
real value. Threshold for the classification |

`S` |
numeric matrix. Matrix of scores: rows represent examples, columns classes |

`thresh.vect` |
numeric vector. Vector of the thresholds for multiple classes (one threshold for each class) |

`pos.scores` |
vector with scores of positive examples. It is returned from multiple.ker.score.cv. |

`av.scores` |
a vector with the average scores computed by multiple.ker.score.cv. It may be a named vector. If not, the names attributes corresponding to the indices of the vector are added. |

`ind.positives` |
indices of the positive examples. They are the indices of av.scores corresponding to positive examples. |

`alpha` |
quantile level (def. 0.05) |

`thresh.pos` |
only values larger than thresh.pos are retained in pos.scores (def.: 0) |

`compute.acc`

computes the accuracy for a single class

`compute.F`

computes the F-score for a single class

`norm1`

computes the L1-norm of a numeric vector

`Unit.sphere.norm`

normalize a kernel according to the unit sphere

`do.stratified.cv.data`

generates data for the stratified cross-validation. In particular subdividas the indices that refer to the rows of the data matrix in different folds (separated for positive and negative examples)

`labelsfromscores`

computes the labels of a single class from the corresponding scores

`Multiple.labels.from.scores`

computes the labels of multiple classes from the corresponding scores

`selection.test`

is a non parametric test to select the most significant unlabeled examples

`compute.acc`

returns the accuracy

`compute.F`

returns the F-score

`norm1`

returns the L1-norm value

`Unit.sphere.norm`

returns the kernel normalized according to the unit sphere

`do.stratified.cv.data`

returns a list with 2 two components:

`fold.non.positives` |
a list with k components. Each component is a vector with the indices of the non positive elements of the fold |

`fold.positives` |
a list with k components. Each component is a vector with the indices of the positive elements of the fold |

Indices refer to row numbers of the data matrix

`labelsfromscores`

returns a numeric vector res with 0 or 1 values. The label res[i]=1 if scores[i]>thresh, otherwise res[i]=0

`Multiple.labels.from.scores`

returns a binary matrix with the labels of the predictions. Rows represent examples, columns classes. Element L[i,j] is the label of example i w.r.t. class j. L[i,j]=1 if i belongs to j, 0 otherwise.

`selection.test`

returns a list with 5 components:

`selected` |
a named vector with the components of av.scores selected by the test |

`selected.labeled` |
a named vector with the labeled components of av.scores selected by the test |

`selected.unlabeled` |
a named vector with the unlabeled components of av.scores selected by the test |

`thresh` |
the score threshold selected by the test |

`alpha` |
significance level (the same value of the input) |

1 2 3 4 5 6 | ```
# L1-norm of a vector
norm1(rnorm(10));
# generation of 5 stratified folds;
do.stratified.cv.data(1:100, 1:10, k = 5, seed = NULL);
# generation of labels form scores.
labelsfromscores(runif(20), thresh=0.3);
``` |

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