RCPA: Consensus Pathway Analysis

Provides a set of functions to perform pathway analysis and meta analysis from multiple gene expression datasets, as well as visualization of the results (Nguyen et al. (2024) <doi:10.1002/cpz1.1036>). The package is a wrapper of the following packages: Ritchie et al. (2015) <doi:10.1093/nar/gkv007>, Love et al. (2014) <doi:10.1186/s13059-014-0550-8>, Robinson et al. (2010) <doi:10.1093/bioinformatics/btp616>, Korotkevich et al. (2016) <arxiv:10.1101/060012>, Efron et al. (2015) <https://CRAN.R-project.org/package=GSA>, and Gu, Z. (2012) <https://CRAN.R-project.org/package=CePa>.

Package details

AuthorHa Nguyen [aut, cre], Phi Bya [aut], Zeynab Maghsoudi [aut], Tin Nguyen [fnd]
Bioconductor views AnnotationDbi Biobase BrowserViz DESeq2 GEOquery RCyjs ROntoTools SummarizedExperiment edgeR fgsea limma
MaintainerHa Nguyen <hvn0006@auburn.edu>
LicenseGPL-3
Version0.2.3
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("RCPA")

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RCPA documentation built on July 3, 2024, 5:08 p.m.