reactType R6 class.
A reaction is an independent chemical reaction corresponding for example to a well in a 96 well plate, a capillary in a rotor, a through-hole on an array, etc. Inherits: rdmlBaseType.
R6Class generator object.
The ID of this reaction
rotor : assign IDs according to the position of the sample on the rotor (1 for the 1st sample, 2 for the 2nd, ...)
plate (96/384/1536 well) : the IDs are assigned in a row-first/column-second manner. For each row, the samples are numbered according to the increasing column number. At the end of a row, the numbering starts at the first column of the next row. An example for this type of plate can be found below :
1 2 3 ... A 1 2 3 B 13 14 ...
1 2 3 ... 1 1 2 3 2 13 14 ...
multi-array plate (BioTrove) : the IDs are assigned in a row-first/column-second manner, ignoring the organisation of sub-arrays. For each row, the samples are numbered according to the increasing column number. At the end of a row, the the next row. An example for this type of plate can be found below : todo...
reactType$new(id, sample, data = NULL)
reactIdType. See 'Details'.
idReferencesType. SampleID - A reference to a sample.
AsDataFrame(dp.type = "adp")
Represents amplification (
dp.type = "adp") or melting (
dp.type = "mdp") data points of all targets as one
react idto thew human readable form (i.e. '13' -> 'B1').
pcrFormatType. Only for 'ABC' '123' format!
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