reactType R6 class.

Description

A reaction is an independent chemical reaction corresponding for example to a well in a 96 well plate, a capillary in a rotor, a through-hole on an array, etc. Inherits: rdmlBaseType.

Usage

1

Format

An R6Class generator object.

Details

The ID of this reaction

Schemas :

Initialization

1
reactType$new(id, sample, data = NULL, pcrFormat = pcrFormatType$new(8, 12, labelFormatType$new("123"), labelFormatType$new("ABC")))

@section Fields:

id

reactIdType. See 'Details'.

sample

idReferencesType. SampleID - A reference to a sample.

data

list of dataType.

position

Human readable form of the react id (i.e. '13' -> 'B1')..

Methods

AsDataFrame(dp.type = "adp")

Represents amplification (dp.type = "adp") or melting (dp.type = "mdp") data points of all targets as one data.frame

.recalcPosition(pcrformat)

Converts react id to the human readable form (i.e. '13' -> 'B1'). This converted value can be accessed by position field. pcrFormat is pcrFormatType. Currently, only 'ABC' and '123' are supported as labels. For '123' '123' the Position will look like 'r01c01', for 'ABC' '123' it will be 'A01' and for '123' 'ABC' it will be 01A. 'ABC' 'ABC' is not currently supported. Note that 'ABC' will result in loss of information if the experiment contains more than 26 rows!


Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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