getfdata-method: Gets fluorescence data vectors from 'RDML' object

Description Arguments Value Author(s) Examples

Description

Gets fluorescence data vectors from RDML object for specified method of experiment.

Arguments

request

Output from AsTable method(RDML.AsTable)

dp.type

Type of fluorescence data (i.e. 'adp' for qPCR or 'mdp' for melting)

long.table

Output table is ready for ggplot (See RDML.AsTable for example)

Value

matrix which contains selected fluorescence data and additional information fromm request if long.table = TRUE.

Author(s)

Konstantin A. Blagodatskikh <[email protected]>, Stefan Roediger <[email protected]>, Michal Burdukiewicz <[email protected]>

Examples

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## Not run: 
## internal dataset BioRad_qPCR_melt.rdml (in 'data' directory)
## generated by Bio-Rad CFX96. Contains qPCR and melting data.
## Import without splitting by targets/types and with
## custom name pattern.
PATH <- path.package("RDML")
filename <- paste(PATH, "/extdata/", "BioRad_qPCR_melt.rdml", sep ="")
cfx96 <- RDML$new(filename)
## Select melting fluorescence data with sample.type 'unkn'.
library(dplyr)
tab <- cfx96$AsTable()
fdata <- cfx96$GetFData(filter(tab, sample.type == "unkn"),
                        dp.type = "adp")
## Show names for obtained fdata
colnames(fdata)

## End(Not run)

RDML documentation built on Sept. 5, 2017, 5:03 p.m.