plotInit: Plot initialization

In REMixed: Regularized Estimation in Mixed Effects Model

Plot initialization

Description

Plot initialization

Usage

plotInit(init, alpha = NULL, trueValue = NULL)

Arguments

init	outputs from initStrat function.
alpha	named list of named vector "alpha0", "alpha1" (all alpha1 are mandatory). The name of alpha$alpha0 and alpha$alpha1 are the observation model names from the monolix project to which they are linked (if the observations models are defined whithout intercept, alpha$alpha0 need to be set to the vector NULL).
trueValue	(for simulation purpose) named vector containing the true value of regularization parameter.

Value

log-likelihood value for all groups of genes tested.

See Also

initStrat.

Examples

## Not run: 
project <- getMLXdir()

ObsModel.transfo = list(S=list(AB=log10),
                        linkS="yAB",
                        R=rep(list(S=function(x){x}),5),
                        linkR = paste0("yG",1:5))

alpha=list(alpha0=NULL,
           alpha1=setNames(paste0("alpha_1",1:5),paste0("yG",1:5)))

init <- initStrat(project,alpha,ObsModel.transfo,seed=1710)

plotInit(init)

## End(Not run)

REMixed documentation built on Jan. 19, 2026, 5:07 p.m.