RInSp: R Individual Specialization (RInSp)

Share:

Functions to calculate several ecological indices of individual and population niche width (Araujo's E, clustering and pairwise similarity among individuals, IS, Petraitis' W, and Roughgarden's WIC/TNW) to assess individual specialization based on data of resource use. Resource use can be quantified by counts of categories, measures of mass/lenght or proportions. Monte Carlo resampling procedures are available for hypothesis testing against multinomial null models.

Author
Dr. Nicola Zaccarelli, Dr. Giorgio Mancinelli, and Prof. Dan Bolnick
Date of publication
2015-02-10 13:01:51
Maintainer
Dr. Nicola Zaccarelli <nicola.zaccarelli@gmail.com>
License
GPL (>= 2)
Version
1.2

View on CRAN

Man pages

Eindex
Calculate index E and Cws
Emc
Monte Carlo resampling procedure for index E and Cws
Hier2L
Variance partition and WIC/TNW
import.RInSp
Import data into a RInSp object
like.Wi
Likelihood measure of niche breadth
MCp.RInSp
Monte Carlo resampling procedure
NODF
Nestedness metric based on overlap and decreasing fill
Null.Hp.RInSp
Generate a data set based on a specific null hypothesis
overlap
Mean pairwise overlap
pop.diet
Calculate population diet
PSicalc
Calculate the proportional similarity index
RinSp2vegan
Vegan support procedure
RInSp-package
R Individual Specialization
Stickleback
Example of data from threespine Stickleback gut contents
sumMC.RInSp
Summary function for Monte Carlo resampling results
Trout
Example of continuous data from fish prey lengths of brown...
WTcMC
Monte Carlo resampling of WIC/TNW for the continuous case
WTdMC
Monte Carlo resampling of WIC/TNW for the discrete case

Files in this package

RInSp
RInSp/inst
RInSp/inst/citation
RInSp/src
RInSp/src/Emc.c
RInSp/src/PSicalc.c
RInSp/src/WTcMC.c
RInSp/src/MCprocedure.c
RInSp/src/WTdMC.c
RInSp/NAMESPACE
RInSp/data
RInSp/data/Trout.rda
RInSp/data/Stickleback.rda
RInSp/R
RInSp/R/Emc.R
RInSp/R/overlap.r
RInSp/R/sumMC.RInSp.R
RInSp/R/import.RInSp.R
RInSp/R/Null.Hp.RInSp.R
RInSp/R/PSicalc.R
RInSp/R/Hier2L.R
RInSp/R/WTdMC.R
RInSp/R/like.Wi.R
RInSp/R/pop.diet.R
RInSp/R/MCp.RInSp.r
RInSp/R/nodf.r
RInSp/R/Eindex.R
RInSp/R/RInSp2vegan.r
RInSp/R/WTcMC.R
RInSp/MD5
RInSp/DESCRIPTION
RInSp/man
RInSp/man/PSicalc.Rd
RInSp/man/RInSp-package.Rd
RInSp/man/sumMC.RInSp.Rd
RInSp/man/Hier2L.Rd
RInSp/man/Null.Hp.RInSp.Rd
RInSp/man/Trout.Rd
RInSp/man/overlap.Rd
RInSp/man/RinSp2vegan.Rd
RInSp/man/Eindex.Rd
RInSp/man/import.RInSp.Rd
RInSp/man/NODF.Rd
RInSp/man/pop.diet.Rd
RInSp/man/MCp.RInSp.Rd
RInSp/man/WTcMC.Rd
RInSp/man/WTdMC.Rd
RInSp/man/Emc.Rd
RInSp/man/Stickleback.Rd
RInSp/man/like.Wi.Rd