Man pages for RJaCGH
Reversible Jump MCMC for the Analysis of CGH Arrays
| genomePlot | Plot of the genome with probabilities of alteration. |
| modelAveraging | Method for model averaging for RJaCGH objects. |
| normal.HMM.likelihood.NH.C | Likelihood for non-homogeneous hidden Markov model |
| plot.pREC_S | Plot number of probes shared by pairs of arrays |
| plotQNH | Plot transition probabilities |
| plot.RJaCGH | 'plot' method for RJaCGH objects |
| pREC_A | Probabilistic Common Regions for copy number alteration. |
| pREC_S | Subgroups of arrays that share common alterations |
| print.pREC_A | Method for printing probabilistic common region. |
| print.pREC_S | Method for printing probabilistic common regions |
| print.summary.RJaCGH | print summary of RJaCGH fit |
| QNH | Transition Matrix for non-homogeneous Hidden Markov Model |
| relabelStates | Relabelling of hidden states to biological states of... |
| RJaCGH | Reversible Jump MCMC for the analysis of arrays of CGH |
| simulateRJaCGH | Simulate observations form a hidden Markov model with... |
| smoothMeans | Smoothed posterior mean |
| snijders | Public CGH data of Snijders |
| states | 'states' method for RJaCGH objects |
| summary.RJaCGH | Summarizing RJaCGH models |
| trace.plot | Trace plot for 'RJaCGH' object |
